View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7372_high_6 (Length: 304)
Name: NF7372_high_6
Description: NF7372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7372_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 43111708 - 43111985
Alignment:
| Q |
18 |
aatacaatacaaaaaatagtaataatcattaaaatctatttcatgatctttattattgttcatccctaaattctaagaaccattaaaaataataataatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43111708 |
aatacaatacaaaaaatagtaataatcattaaaatctatttcatgatctttattattgttcatccctaaattctaagaaccattaaaaataataataatc |
43111807 |
T |
|
| Q |
118 |
gtgtgggtgaatggttgtaagatgggtatgtgattccatagctcatcactcaaactagtgaatccttagtttcatcatcatcttcatggaaaacaattag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43111808 |
gtgtgggtgaatggttgtaagatgggtatgtgattccatagctcatcactcaaactagtgaatccttagtttcatcatcatcttcatggaaaacaatgag |
43111907 |
T |
|
| Q |
218 |
ggaaatagaaatggaggttgtttaattaatattttgacgggttcttaaaatctgggttactgcatctgcaagtattatc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43111908 |
ggaaatagaaatggaggttgtttaattaatattttgac-ggttcttaaaatctgggttactgcatctgcaagtattatc |
43111985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 21671197 - 21670923
Alignment:
| Q |
18 |
aatacaatacaaaaaatagtaataatcattaaaatctatttcatgatctttattattgttcatccctaaattctaagaaccattaaaaataataataatc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21671197 |
aatacaatacaaaaaatagtaataatcattaaaatctatttcatgatctttattattcttcatccctaaattctaagaaccattaaaaataataataatc |
21671098 |
T |
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| Q |
118 |
gtgtgggtgaatggttgtaagatgggtatgtgattccatagctcatcactcaaactagtgaatccttagtttcatcatcatcttcatggaaaacaattag |
217 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||| |||| | |
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| T |
21671097 |
gtgtgggtgaatgattgtaagatgggtatgtgattccatagttcatcactcaaactagtgaatccttcgtttcatcatcatcttcatacaaaccaatggg |
21670998 |
T |
|
| Q |
218 |
ggaaatagaaatggaggttgtttaattaatattttgacgggttcttaaaatctgggttactgcatctgcaagtattatc |
296 |
Q |
| |
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|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21670997 |
ggaaatagaaataaaggttgtttaattaatattt----gggttcttaaaatctgggttactgcatctgcaagtattatc |
21670923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 60 - 296
Target Start/End: Complemental strand, 4513521 - 4513285
Alignment:
| Q |
60 |
atgatctttattattgttcatccctaaattctaagaaccattaaaaataataataatcgtgtgggtgaatggttgtaagatgggtatgtgattccatagc |
159 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4513521 |
atgatctttattatttttcatccctaaattctaagaaccattaaaaataataataatcgtgtgggtgaatggttgtaggatgggtatgtgattccatagt |
4513422 |
T |
|
| Q |
160 |
tcatcactcaaactagtgaatccttagtttcatcatcatcttcatggaaaacaattagggaaatagaaatggaggttgtttaattaatattttgacgggt |
259 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| | | |||| ||||||||| |||| |||||||||||||||||| ||| ||||| |
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| T |
4513421 |
tcatcactcaaaccagtgaatccttagtttcatcatcatcttcatacacaccaatgagggaaataaaaatagaggttgtttaattaatagtttaacgggc |
4513322 |
T |
|
| Q |
260 |
tcttaaaatctgggttactgcatctgcaagtattatc |
296 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||| |
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| T |
4513321 |
tcttaaaatctgggttactgcatttgcaagtattatc |
4513285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 4513605 - 4513553
Alignment:
| Q |
18 |
aatacaatacaaaaaatagtaataatcattaaaatctatttcatgatctttat |
70 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4513605 |
aataaaatacaaaaaatagtagtaatcattaaaatctatttcatgatctttat |
4513553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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