View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7372_high_9 (Length: 291)

Name: NF7372_high_9
Description: NF7372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7372_high_9
NF7372_high_9
[»] chr4 (3 HSPs)
chr4 (37-219)||(56240890-56241066)
chr4 (63-158)||(23947210-23947305)
chr4 (168-217)||(23947405-23947454)
[»] chr1 (2 HSPs)
chr1 (63-158)||(16105639-16105734)
chr1 (168-217)||(16105486-16105535)
[»] chr8 (1 HSPs)
chr8 (72-158)||(16623900-16623986)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 37 - 219
Target Start/End: Original strand, 56240890 - 56241066
Alignment:
Q  37 attgagtaagaagaatagtatactattactaactgaaatgaatgaagtgtgacttgtgacttatcttcctcctgcttgtgtttgattctgacaacctcgt 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  56240890 attgagtaagaagaatagtatactattactaactgaaatgaatgaagtgtgacttgtgccttatcttcctcctgcttgtgtttgattctgacaaccttgt 56240989  T
Q  137 ccaccttttctttacaattactatcaagaataagaatgggtttatttgttagacgggactttctcctgaagagcttcttcttc 219  Q
    |||||||||||||||||||||||||      |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  56240990 ccaccttttctttacaattactatc------aagaatggatttatttgttagacgggactttctcctgaagagcttcttcttc 56241066  T

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Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 23947210 - 23947305
Alignment:
Q  63 tactaactgaaatgaatgaagtgtgacttgtgacttatcttcctcctgcttgtgtttgattctgacaacctcgtccaccttttctttacaattact 158  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  23947210 tactaactgaaatgaatgaagtctgacttgtgccttatcttcctcctgcttctgtttgattctgacaacctcctccaccttttctttacaattact 23947305  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 23947405 - 23947454
Alignment:
Q  168 aagaatgggtttatttgttagacgggactttctcctgaagagcttcttct 217  Q
    |||||||||||||||||||||||| ||||||||||| ||  |||||||||    
T  23947405 aagaatgggtttatttgttagacgagactttctccttaattgcttcttct 23947454  T

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Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 16105734 - 16105639
Alignment:
Q  63 tactaactgaaatgaatgaagtgtgacttgtgacttatcttcctcctgcttgtgtttgattctgacaacctcgtccaccttttctttacaattact 158  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  16105734 tactaactgaaatgaatgaagtctgacttgtgccttatcttcctcctgcttctgtttgattctgacaacctcctccaccttttctttacaattact 16105639  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 16105535 - 16105486
Alignment:
Q  168 aagaatgggtttatttgttagacgggactttctcctgaagagcttcttct 217  Q
    |||||||||||||||||||||||| ||||||||||||||  |||||||||    
T  16105535 aagaatgggtttatttgttagacgagactttctcctgaattgcttcttct 16105486  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 16623986 - 16623900
Alignment:
Q  72 aaatgaatgaagtgtgacttgtgacttatcttcctcctgcttgtgtttgattctgacaacctcgtccaccttttctttacaattact 158  Q
    |||||||||| || ||||||  | ||| ||||| |||||||| ||||||||||| |||||||  |||||||||||| ||||||||||    
T  16623986 aaatgaatgatgtttgactttcgccttgtcttcttcctgcttctgtttgattctcacaaccttctccaccttttctgtacaattact 16623900  T

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