View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7372_low_1 (Length: 691)
Name: NF7372_low_1
Description: NF7372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7372_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 13 - 673
Target Start/End: Complemental strand, 3808885 - 3808234
Alignment:
| Q |
13 |
aatatacacatgtgtgtttggttttacttttgcatgagacaaaattgattttagaggtatataattaattgacatatttggaaatgtgctccagtgtaat |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
3808885 |
aatatacacatgtgtatttggttttacttttgcacgagacaaaattgattttagaggtatataattaattgacatatttggaaatgtgctctagtgtaat |
3808786 |
T |
|
| Q |
113 |
tgattttgtctccataattaattctaatttgaacttaaaatttggaggttttgcctaaacattgcttatgtttgattgaattccctatgt----tgaatc |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
3808785 |
tgattttgtctccataattaattctaatttgaa-------------ggttttgcctaaacattgcttatgtttgattgaattccctatgtatgttgaatc |
3808699 |
T |
|
| Q |
209 |
taaggtgattaacagggtacacacgtagttgaatccgaagtgtacttatgtttgattcattcgcttaaaagtgaaatcaactgtaaatttgtggctaaaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
3808698 |
taaggtgattaacagggtacacacgtagttgaatccgaagtgtacttatgtttgattcattcccttaaaagtgaaatcaactgtaaatttgtggctaaaa |
3808599 |
T |
|
| Q |
309 |
atcacgtttggagtaggaaacttcaaatctaaaagggaaatggaactgaaaagatggggtaatggcgttttcttttgcaacaaatggcaagagttcatag |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3808598 |
atcacgtttggagtaggaaacttcaaatctaaaagggaaatggaactgaaaagatggggtaatggcgttttcttttgcaacaaatggcaagagttcatag |
3808499 |
T |
|
| Q |
409 |
aatactactcaataggatatggttggtacctttctttcaattatgaaggaaattccaaagtttagtgttattatatttgacgtaacttctgttgggattt |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3808498 |
aatactactcaataggatatggttggtacctttctttcaattatgaaggaaattccaaagtttagtgttattatatttgacgtaacttctgttgggattt |
3808399 |
T |
|
| Q |
509 |
gctatccgttcaaaactccaagtactaatagagaaccaaacacaaagtatcctagtcatgggaaagaggacaaaagcatgtttaaacatgcttctaaaaa |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3808398 |
gctatccgttcaaaactccaagtactaatagagaaccaaacacaaagtatcctagtcatgggaaagaggacaaaagcatgtttaaacatgcttctaaaaa |
3808299 |
T |
|
| Q |
609 |
ttgctaaggcaaatcgtacggtgaggattatactttagaatttttggtttaaagtaaatgtttat |
673 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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|
| T |
3808298 |
ttgctaaggcaaatcgtacggtgaggattatactttggagtttttggtttaaagtaaatgtttat |
3808234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 3e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 375 - 564
Target Start/End: Complemental strand, 29838436 - 29838248
Alignment:
| Q |
375 |
gttttcttttgcaacaaatggcaagagttcatagaatactactcaataggatatggttggtacctttctttcaattatgaaggaaattccaaagtttagt |
474 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| || || |||||||||||||| | | |||||||||| |||||||| ||||| |||||||||| |
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|
| T |
29838436 |
gttttcttttgcaacaaatggcaagagtttgtagaatattattctataggatatggttgcttcatttctttcaaatatgaagggaattc-aaagtttagt |
29838338 |
T |
|
| Q |
475 |
gttattatatttgacgtaacttctgttgggatttgctatccgttcaaaactccaagtactaatagagaaccaaacacaaagtatcctagt |
564 |
Q |
| |
|
|||||||||||||| | ||||||||||| |||| |||||| ||| ||||||||||||||||| |||||||||| ||||| ||||||||| |
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|
| T |
29838337 |
gttattatatttgatgcaacttctgttgaaatttcctatcctttcgaaactccaagtactaatggagaaccaaaaacaaattatcctagt |
29838248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 4e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 376 - 548
Target Start/End: Complemental strand, 6903582 - 6903411
Alignment:
| Q |
376 |
ttttcttttgcaacaaatggcaagagttcatagaatactactcaataggatatggttggtacctttctttcaattatgaaggaaattccaaagtttagtg |
475 |
Q |
| |
|
||||||||| |||| ||||||||||||| | ||||||| ||| ||||||||||||| ||||| |||||||| || ||||||||||| ||||||||||| |
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|
| T |
6903582 |
ttttcttttacaacgaatggcaagagtttgcaaaatactattcattaggatatggttgctacctatctttcaaatacgaaggaaattc-aaagtttagtg |
6903484 |
T |
|
| Q |
476 |
ttattatatttgacgtaacttctgttgggatttgctatccgttcaaaactccaagtactaatagagaaccaaa |
548 |
Q |
| |
|
||||||||||||| |||||||| |||| |||||||||||| |||||||||| ||||||||| ||||| |||| |
|
|
| T |
6903483 |
ttattatatttgatgtaacttcggttgagatttgctatccactcaaaactccgagtactaatggagaaacaaa |
6903411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 50375638 - 50375588
Alignment:
| Q |
27 |
tgtttggttttacttttgcatgagacaaaattgattttagaggtatataat |
77 |
Q |
| |
|
|||||| || |||||||| ||||| ||||||||||||||||||| |||||| |
|
|
| T |
50375638 |
tgtttgattctacttttggatgagtcaaaattgattttagaggtgtataat |
50375588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 6e-39; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 376 - 554
Target Start/End: Complemental strand, 197282 - 197105
Alignment:
| Q |
376 |
ttttcttttgcaacaaatggcaagagttcatagaatactactcaataggatatggttggtacctttctttcaattatgaaggaaattccaaagtttagtg |
475 |
Q |
| |
|
||||||||| |||| ||||| |||||||| | ||||||| ||| |||| |||||||| ||||| |||||||| || ||||| ||||| ||||||||||| |
|
|
| T |
197282 |
ttttcttttccaacgaatgggaagagttcgcaaaatactattcattagggtatggttgctacctatctttcaaatacgaagggaattc-aaagtttagtg |
197184 |
T |
|
| Q |
476 |
ttattatatttgacgtaacttctgttgggatttgctatccgttcaaaactccaagtactaatagagaaccaaacacaaa |
554 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| ||||| || |||||||||||| |||| |||||||||||||||| |
|
|
| T |
197183 |
ttattatatttgacgtaacttatgttgagatttgttatccattaaaaactccaagtgttaatggagaaccaaacacaaa |
197105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 375 - 563
Target Start/End: Complemental strand, 225040 - 224853
Alignment:
| Q |
375 |
gttttcttttgcaacaaatggcaagagttcatagaatactactcaataggatatggttggtacctttctttcaattatgaaggaaattccaaagtttagt |
474 |
Q |
| |
|
|||| |||||||||||||||| || | || ||||||||| || || |||||||||| | | | |||||||| |||||||| ||||| |||||||||| |
|
|
| T |
225040 |
gtttacttttgcaacaaatggaaacaatttgcagaatactattctttaagatatggttgcttcatgtctttcaaatatgaagggaattc-aaagtttagt |
224942 |
T |
|
| Q |
475 |
gttattatatttgacgtaacttctgttgggatttgctatccgttcaaaactccaagtactaatagagaaccaaacacaaagtatcctag |
563 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||| ||||| |||||||| ||| |||||| |
|
|
| T |
224941 |
gttattatatttgatgtaacttctgttgagatttgctatccactcaaaactccaagtactaatggagaaacaaacacagagtgtcctag |
224853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 343 - 565
Target Start/End: Complemental strand, 222138 - 221917
Alignment:
| Q |
343 |
gggaaatggaactgaaaagatggggtaatggcgttttcttttgcaacaaatggcaagagttcatagaatactactcaataggatatggttggtacctttc |
442 |
Q |
| |
|
|||||||||||||||| | ||| || || | ||||| ||||||||||||||||||| |||| ||||||||| || ||||| ||||||| | | | |
|
|
| T |
222138 |
gggaaatggaactgaagaaatgcggcaacgacgtttacttttgcaacaaatggcaacagtttgcagaatactattctatagggtatggttccttcttgcg |
222039 |
T |
|
| Q |
443 |
tttcaattatgaaggaaattccaaagtttagtgttattatatttgacgtaacttctgttgggatttgctatccgttcaaaactccaagtactaatagaga |
542 |
Q |
| |
|
|||||| |||||||| |||| |||||||| |||| |||||||||| ||||||||||||| |||||||||||| |||||||||| ||||| |||| |||| |
|
|
| T |
222038 |
tttcaaatatgaaggggattc-aaagtttaatgttgttatatttgatgtaacttctgttgagatttgctatccattcaaaactcaaagtattaatggaga |
221940 |
T |
|
| Q |
543 |
accaaacacaaagtatcctagtc |
565 |
Q |
| |
|
| |||||||||||| || ||||| |
|
|
| T |
221939 |
aacaaacacaaagtgtcatagtc |
221917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 376 - 548
Target Start/End: Original strand, 204911 - 205082
Alignment:
| Q |
376 |
ttttcttttgcaacaaatggcaagagttcatagaatactactcaataggatatggttggtacctttctttcaattatgaaggaaattccaaagtttagtg |
475 |
Q |
| |
|
||||||||| |||| ||||||||||||| | ||||||| || |||||| |||||| ||||| |||||||| || ||||||||||| ||||||||||| |
|
|
| T |
204911 |
ttttcttttacaacgaatggcaagagtttgcaaaatactattcgttaggatgtggttgctacctatctttcaaatacgaaggaaattc-aaagtttagtg |
205009 |
T |
|
| Q |
476 |
ttattatatttgacgtaacttctgttgggatttgctatccgttcaaaactccaagtactaatagagaaccaaa |
548 |
Q |
| |
|
|| |||||||||| |||||||| |||| |||||||||||| |||||||||| ||||||||| ||||| |||| |
|
|
| T |
205010 |
ttgttatatttgatgtaacttcggttgagatttgctatccactcaaaactccgagtactaatggagaaacaaa |
205082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 343 - 565
Target Start/End: Complemental strand, 217193 - 216972
Alignment:
| Q |
343 |
gggaaatggaactgaaaagatggggtaatggcgttttcttttgcaacaaatggcaagagttcatagaatactactcaataggatatggttggtacctttc |
442 |
Q |
| |
|
|||||||| ||||||| | ||| || |||| ||||| ||||||||||||||||||| |||| ||||||||| || ||||| ||||||| | ||| | |
|
|
| T |
217193 |
gggaaatgaaactgaagaaatgcggcaatgacgtttacttttgcaacaaatggcaacagtttgcagaatactattctatagggtatggttccttcctgtg |
217094 |
T |
|
| Q |
443 |
tttcaattatgaaggaaattccaaagtttagtgttattatatttgacgtaacttctgttgggatttgctatccgttcaaaactccaagtactaatagaga |
542 |
Q |
| |
|
|||||| |||||||| |||| |||||||||||| |||||||||| | ||||||| ||| |||||||||||| |||||||||| |||||| ||| |||| |
|
|
| T |
217093 |
tttcaaatatgaaggggattc-aaagtttagtgtctttatatttgatgcaacttctattgagatttgctatccattcaaaactcaaagtacaaatggaga |
216995 |
T |
|
| Q |
543 |
accaaacacaaagtatcctagtc |
565 |
Q |
| |
|
| |||| ||||||| || ||||| |
|
|
| T |
216994 |
aacaaaaacaaagtttcatagtc |
216972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 375 - 551
Target Start/End: Complemental strand, 210561 - 210383
Alignment:
| Q |
375 |
gttttcttttgcaacaa---atggcaagagttcatagaatactactcaataggatatggttggtacctttctttcaattatgaaggaaattccaaagttt |
471 |
Q |
| |
|
|||| |||||||||||| ||||||| |||| ||||||||| || || |||| ||||| | ||| ||||||| || ||||| ||||| ||| ||| |
|
|
| T |
210561 |
gtttacttttgcaacaaggaatggcaacagtttgcagaatactattctttaagatacggttgcttcctgtctttcagatacgaagggaattc-aaatttt |
210463 |
T |
|
| Q |
472 |
agtgttattatatttgacgtaacttctgttgggatttgctatccgttcaaaactccaagtactaatagagaaccaaacac |
551 |
Q |
| |
|
|| |||||||||||||| | ||||||||||| ||||||||||| || |||||||||||||||| | ||||| ||||||| |
|
|
| T |
210462 |
agcgttattatatttgatgcaacttctgttgaaatttgctatccattaaaaactccaagtactagtggagaaacaaacac |
210383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 443 - 542
Target Start/End: Complemental strand, 198372 - 198274
Alignment:
| Q |
443 |
tttcaattatgaaggaaattccaaagtttagtgttattatatttgacgtaacttctgttgggatttgctatccgttcaaaactccaagtactaatagaga |
542 |
Q |
| |
|
|||||| ||| |||| ||||| |||||||| |||| |||||| ||| ||||||||||| ||||| ||| | ||||||||||||||||||||| |||| |
|
|
| T |
198372 |
tttcaactatcaagggaattc-aaagtttaatgttgttatatatgatacaacttctgttgagatttcttattcattcaaaactccaagtactaatggaga |
198274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 11038100 - 11038216
Alignment:
| Q |
48 |
gagacaaaattgattttagaggtatataattaa--ttgacatatttggaaatgtgctccagtgtaattgattttgtctccataattaattctaatttgaa |
145 |
Q |
| |
|
||||||||||||||| ||||||||||||||| | ||||||| ||||| |||| ||| | || | |||||||| ||||| | || ||||||| ||||| |
|
|
| T |
11038100 |
gagacaaaattgattctagaggtatataattgattttgacatgtttgg--atgttctcgaatggagttgatttttcctccagagttgattctaacttgaa |
11038197 |
T |
|
| Q |
146 |
cttaaaatttggaggtttt |
164 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
11038198 |
gctaaaatttggaggtttt |
11038216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 93
Target Start/End: Complemental strand, 3716800 - 3716755
Alignment:
| Q |
50 |
gacaaaattgattttagaggtatataattaat--tgacatatttgg |
93 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
3716800 |
gacaaaattgattttagaggtatagaattaattctgacatatttgg |
3716755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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