View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7372_low_10 (Length: 295)
Name: NF7372_low_10
Description: NF7372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7372_low_10 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 24298100 - 24298361
Alignment:
| Q |
17 |
gtgctccagtatacctggcagctgttcttgaatatcttgctgctgaagttcttgagttggctggaaatgcagctcgtgataacaagaagaatagaatcat |
116 |
Q |
| |
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||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24298100 |
gtgctccggtatacctagcagcagttcttgaatatcttgctgctgaagttcttgagttggctggaaatgcagcacgtgataacaagaagaatagaatcat |
24298199 |
T |
|
| Q |
117 |
tccaaggcatgtgttgttggctgttaggaatgatgaagagcttggtaaattgcttaatggtgttaccattgctcatggtggtgttcttccaaacattaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24298200 |
tccaaggcatgtgttgttggctgttaggaatgatgaagagcttggtaaattgcttaatggtgttaccattgctcatggtggtgttcttccaaacattaac |
24298299 |
T |
|
| Q |
217 |
cccatcctcttgcctaagaagactgaaaaaactgctcctaaggagccaaagaaggctggaaa |
278 |
Q |
| |
|
|| ||||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||||||| |
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|
| T |
24298300 |
ccaatccttttgcctaagaagaatgaaaaagctgttcctaaggagccaaagaaggctggaaa |
24298361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 23875309 - 23875570
Alignment:
| Q |
17 |
gtgctccagtatacctggcagctgttcttgaatatcttgctgctgaagttcttgagttggctggaaatgcagctcgtgataacaagaagaatagaatcat |
116 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
23875309 |
gtgctccagtatacctagcagcagttcttgaatatctcgctgctgaggttcttgagttggctggaaatgcagcacgtgataacaagaagaatagaatcat |
23875408 |
T |
|
| Q |
117 |
tccaaggcatgtgttgttggctgttaggaatgatgaagagcttggtaaattgcttaatggtgttaccattgctcatggtggtgttcttccaaacattaac |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23875409 |
tccaaggcatgtgttgttggctgttaggaatgatgaagaacttggtaaattgcttaatggtgttaccattgctcatggtggtgttcttccaaacattaac |
23875508 |
T |
|
| Q |
217 |
cccatcctcttgcctaagaagactgaaaaaactgctcctaaggagccaaagaaggctggaaa |
278 |
Q |
| |
|
|| ||||| ||||||||||||| ||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
23875509 |
ccaatcctattgcctaagaagaatgaaaaaactgatactaaggagccaaagaaggctggaaa |
23875570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 278
Target Start/End: Complemental strand, 23423644 - 23423383
Alignment:
| Q |
17 |
gtgctccagtatacctggcagctgttcttgaatatcttgctgctgaagttcttgagttggctggaaatgcagctcgtgataacaagaagaatagaatcat |
116 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
23423644 |
gtgctccagtatacctagcagcagttcttgaatatctcgctgctgaggttcttgagttggctggaaatgcagcacgtgataacaagaagaatagaatcat |
23423545 |
T |
|
| Q |
117 |
tccaaggcatgtgttgttggctgttaggaatgatgaagagcttggtaaattgcttaatggtgttaccattgctcatggtggtgttcttccaaacattaac |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23423544 |
tccaaggcatgtgttgttggctgttaggaatgatgaagatcttggtaaattgcttaatggtgttaccattgctcatggtggtgttcttccaaacattaac |
23423445 |
T |
|
| Q |
217 |
cccatcctcttgcctaagaagactgaaaaaactgctcctaaggagccaaagaaggctggaaa |
278 |
Q |
| |
|
|| ||||| ||||||||||||| |||||| ||| | ||||||||||||||||||||||||| |
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|
| T |
23423444 |
cctatccttttgcctaagaagattgaaaattctgtttctaaggagccaaagaaggctggaaa |
23423383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 23448144 - 23447916
Alignment:
| Q |
17 |
gtgctccagtatacctggcagctgttcttgaatatcttgctgctgaagttcttgagttggctggaaatgcagctcgtgataacaagaagaatagaatcat |
116 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23448144 |
gtgctccagtatacctagcagcagttcttgaatatctcgctgctgaggttcttgagttggctggaaatgcagcacgtgataacaagaagaatagaatcat |
23448045 |
T |
|
| Q |
117 |
tccaaggcatgtgttgttggctgttaggaatgatgaagagcttggtaaattgcttaatggtgttaccattgctcatggtggtgttcttccaaacattaac |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||| |
|
|
| T |
23448044 |
tccaaggcatgtgttgttggctgttaggaatgatgaagaacttggtaaattgcttaatggtgttaccattgctcatggtggtgtttttcccaacatcaac |
23447945 |
T |
|
| Q |
217 |
cccatcctcttgcctaagaagactgaaaa |
245 |
Q |
| |
|
|| ||||| |||||||||||||||||||| |
|
|
| T |
23447944 |
ccaatccttttgcctaagaagactgaaaa |
23447916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 26827861 - 26828088
Alignment:
| Q |
17 |
gtgctccagtatacctggcagctgttcttgaatatcttgctgctgaagttcttgagttggctggaaatgcagctcgtgataacaagaagaatagaatcat |
116 |
Q |
| |
|
||||||| || ||||| || || ||||||||||| || |||||||| |||||||| ||||| ||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
26827861 |
gtgctccggtttacctagctgcagttcttgaatacctcgctgctgaggttcttgaattggcaggaaacgctgctcgtgataacaagaagaatagaatcat |
26827960 |
T |
|
| Q |
117 |
tccaaggcatgtgttgttggctgttaggaatgatgaagagcttggtaaattgcttaatggtgttaccattgctcatggtggtgttcttccaaacattaac |
216 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| ||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
26827961 |
tccaaggcatttgttgttggctgttaggaatgatgaagagcttggaaaactgcttgctggtgttacaattgctcatggtggtgttcttccgaacattaac |
26828060 |
T |
|
| Q |
217 |
cccatcctcttgcctaagaagactgaaa |
244 |
Q |
| |
|
|| || || ||||||||||||||||||| |
|
|
| T |
26828061 |
ccaattctgttgcctaagaagactgaaa |
26828088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 11 - 204
Target Start/End: Complemental strand, 23446796 - 23446603
Alignment:
| Q |
11 |
gaacctgtgctccagtatacctggcagctgttcttgaatatcttgctgctgaagttcttgagttggctggaaatgcagctcgtgataacaagaagaatag |
110 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23446796 |
gaaccggtgctccagtatacctggcagcagttcttgaatatcttgctgctgaagttcttgagttggctggaaatgcagctcgtgataacaagaagaatag |
23446697 |
T |
|
| Q |
111 |
aatcattccaaggcatgtgttgttggctgttaggaatgatgaagagcttggtaaattgcttaatggtgttaccattgctcatggtggtgttctt |
204 |
Q |
| |
|
||| |||||||||||| ||||||| ||||||| |||||||||||| ||||| ||| | ||| |||||||| ||||||||||||||| ||||| |
|
|
| T |
23446696 |
aattattccaaggcatttgttgtttgctgttatgaatgatgaagaacttgggaaactacttgtaggtgttacaattgctcatggtggtattctt |
23446603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 37 - 218
Target Start/End: Original strand, 35961663 - 35961844
Alignment:
| Q |
37 |
gctgttcttgaatatcttgctgctgaagttcttgagttggctggaaatgcagctcgtgataacaagaagaatagaatcattccaaggcatgtgttgttgg |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
35961663 |
gctgttcttgaatatcttgctgctgaagttcttgaattggctggtaatgctgctcgtgataacaagaagaataggattattccaaggcatgtgttgttgg |
35961762 |
T |
|
| Q |
137 |
ctgttaggaatgatgaagagcttggtaaattgcttaatggtgttaccattgctcatggtggtgttcttccaaacattaaccc |
218 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
35961763 |
ctgtgaggaatgatgaagagcttgggaaattgcttgctggtgttaccattgctcatggtggtgttcttcctaatattaaccc |
35961844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 12165051 - 12165197
Alignment:
| Q |
11 |
gaacctgtgctccagtatacctggcagctgttct--tgaatatcttgctgctgaagttcttgagttggctggaaatgcagctcgtgataacaagaagaat |
108 |
Q |
| |
|
||||| |||||||||||||||| ||||| ||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12165051 |
gaaccggtgctccagtatacctagcagcagttctcttgaatatctcgctgctgaggttcttgagttggctggaaatgcagctcgtgataacaagaagaat |
12165150 |
T |
|
| Q |
109 |
agaatcattccaaggcatgtgttgttggctgttaggaatgatgaaga |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12165151 |
agaatcattccaaggcatgtgttgttggctgttaggaacgatgaaga |
12165197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 205
Target Start/End: Original strand, 30436995 - 30437128
Alignment:
| Q |
72 |
gttggctggaaatgcagctcgtgataacaagaagaatagaatcattccaaggcatgtgttgttggctgttaggaatgatgaagagcttggtaaattgctt |
171 |
Q |
| |
|
||||| |||||||||||||| ||| ||| ||| | ||| || || ||||||||| || |||||| | |||| |||||||||||| ||||||| | |
|
|
| T |
30436995 |
gttggttggaaatgcagctcatgacaaccggaaaactaggattatcccaaggcatatgctgttggtgataaggatcaatgaagagcttgaaaaattgcat |
30437094 |
T |
|
| Q |
172 |
aatggtgttaccattgctcatggtggtgttcttc |
205 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |
|
|
| T |
30437095 |
gctggagttaccattgctcatggtggtgttcttc |
30437128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 64 - 238
Target Start/End: Original strand, 41257791 - 41257965
Alignment:
| Q |
64 |
gttcttgagttggctggaaatgcagctcgtgataacaagaagaatagaatcattccaaggcatgtgttgttggctgttaggaatgatgaagagcttggta |
163 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||| || ||||| || ||||| |||||||||||||| ||||| |||||||| ||||| | |
|
|
| T |
41257791 |
gttcttgagttggctggaaatgcagcacgtgacaacaagaagaacaggatcatccctaggcacgtgttgttggctgtgaggaacgatgaagaacttggaa |
41257890 |
T |
|
| Q |
164 |
aattgcttaatggtgttaccattgctcatggtggtgttcttccaaacattaaccccatcctcttgcctaagaaga |
238 |
Q |
| |
|
||||| | ||||||||| ||||| ||||| ||||||||||||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
41257891 |
aattgttagctggtgttacaattgcacatggaggtgttcttccaaacatcaacccaatccttttgcctaagaaga |
41257965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 64 - 244
Target Start/End: Complemental strand, 41244503 - 41244323
Alignment:
| Q |
64 |
gttcttgagttggctggaaatgcagctcgtgataacaagaagaatagaatcattccaaggcatgtgttgttggctgttaggaatgatgaagagcttggta |
163 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||||||||||||||| || ||||||||||| ||||||||||| || ||||||||||||||||| || | |
|
|
| T |
41244503 |
gttcttgaattggctggaaatgcggcacgtgataacaagaagaataggataattccaaggcacgtgttgttggcagtgaggaatgatgaagagctaggaa |
41244404 |
T |
|
| Q |
164 |
aattgcttaatggtgttaccattgctcatggtggtgttcttccaaacattaaccccatcctcttgcctaagaagactgaaa |
244 |
Q |
| |
|
|||| | ||| ||||| ||||| ||||||||||||||||||||||| ||||| | || ||||||||||||||||||| |
|
|
| T |
41244403 |
aattattagctggagttacaattgcacatggtggtgttcttccaaacatcaaccctgtgcttttgcctaagaagactgaaa |
41244323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 41251856 - 41251923
Alignment:
| Q |
178 |
gttaccattgctcatggtggtgttcttccaaacattaaccccatcctcttgcctaagaagactgaaaa |
245 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||| ||||| || | ||||| |||||||||||||| |
|
|
| T |
41251856 |
gttaccattgctcgtggtggtgttcttcctaacatcaaccctatgttgttgccaaagaagactgaaaa |
41251923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 41244639 - 41244594
Alignment:
| Q |
17 |
gtgctccagtatacctggcagctgttcttgaatatcttgctgctga |
62 |
Q |
| |
|
||||||| || ||||| || |||||||||||||||||||||||||| |
|
|
| T |
41244639 |
gtgctcctgtttacctcgccgctgttcttgaatatcttgctgctga |
41244594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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