View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7372_low_12 (Length: 280)

Name: NF7372_low_12
Description: NF7372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7372_low_12
NF7372_low_12
[»] chr1 (8 HSPs)
chr1 (16-262)||(871829-872075)
chr1 (123-203)||(32327867-32327945)
chr1 (114-204)||(36194119-36194209)
chr1 (90-202)||(42250262-42250377)
chr1 (101-202)||(33432658-33432759)
chr1 (233-261)||(844675-844703)
chr1 (90-138)||(39717427-39717475)
chr1 (233-261)||(40811322-40811350)
[»] chr3 (3 HSPs)
chr3 (88-250)||(38665442-38665604)
chr3 (100-204)||(27512245-27512349)
chr3 (233-262)||(5442466-5442495)
[»] chr8 (2 HSPs)
chr8 (88-195)||(14292338-14292445)
chr8 (233-261)||(6386762-6386790)
[»] scaffold0332 (1 HSPs)
scaffold0332 (99-203)||(722-826)
[»] chr5 (1 HSPs)
chr5 (114-174)||(32812484-32812544)
[»] chr4 (5 HSPs)
chr4 (94-174)||(42584374-42584454)
chr4 (100-206)||(29614894-29615000)
chr4 (102-173)||(44954627-44954698)
chr4 (88-149)||(39433374-39433435)
chr4 (233-265)||(11056231-11056263)
[»] chr6 (4 HSPs)
chr6 (92-150)||(7624263-7624321)
chr6 (233-262)||(17868021-17868050)
chr6 (233-262)||(17877804-17877833)
chr6 (233-261)||(15277195-15277223)
[»] chr7 (4 HSPs)
chr7 (91-146)||(14100144-14100199)
chr7 (91-146)||(14410161-14410216)
chr7 (233-263)||(10932432-10932462)
chr7 (226-258)||(40753338-40753370)
[»] chr2 (1 HSPs)
chr2 (102-156)||(1319884-1319938)
[»] scaffold0027 (1 HSPs)
scaffold0027 (233-269)||(15358-15394)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 262
Target Start/End: Original strand, 871829 - 872075
Alignment:
Q  16 atagtacaatgcaagacagaactctattggagagagataatactttttatgttggtaaatagatacggtatttttgtactctggacaaaaagttttccca 115  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  871829 atagtacaatacaagacagaactctattggagagagataatactttttatgttggtaaatagatagggtatttttgtactctggacaaaaagttatccca 871928  T
Q  116 tggtttggtgagggacaagaattcttgtttttgttcagtcctttgctacctgttttgtctagtctcatgtccaatttctaaatcaaacaggttacnnnnn 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||         
T  871929 tggtttggtgagggacaagaattcttgtttttgttcagtcctttgctacctgttttgtctagtcccatgtccaatttctaaatcaaacagggtacaaaaa 872028  T
Q  216 nngttgtccagtcccctattttttagcaaatcaaacgcaccctaagt 262  Q
      |||||||||||||||||||||||||||||||||||||||||||||    
T  872029 aagttgtccagtcccctattttttagcaaatcaaacgcaccctaagt 872075  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 32327945 - 32327867
Alignment:
Q  123 gtgagggacaagaattcttgtttttgttcagtcctttgctacctgttttgtctagtctcatgtccaatttctaaatcaaac 203  Q
    |||||||||||  |||||||||||  |||||||  ||||||||||||||||| ||||||||| ||| ||||||||||||||    
T  32327945 gtgagggacaa--attcttgttttcattcagtctcttgctacctgttttgtccagtctcatgaccagtttctaaatcaaac 32327867  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 204
Target Start/End: Complemental strand, 36194209 - 36194119
Alignment:
Q  114 catggtttggtgagggacaagaattcttgtttttgttcagtcctttgctacctgttttgtctagtctcatgtccaatttctaaatcaaaca 204  Q
    |||||||| ||||| ||||| ||||| || ||||||| ||||  |||||| || ||||||||||| ||||| ||||||| |||||||||||    
T  36194209 catggtttagtgagagacaataattcatggttttgtttagtctcttgctatctattttgtctagtttcatgaccaatttataaatcaaaca 36194119  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 202
Target Start/End: Original strand, 42250262 - 42250377
Alignment:
Q  90 tgtactctggacaaaaagttttcccat---ggtttggtgagggacaagaattcttgtttttgttcagtcctttgctacctgttttgtctagtctcatgtc 186  Q
    |||||||| ||||||||||| || |||   ||||| ||||||||||||||||   |||||||| |  ||| | ||| |||||||||||||||| |||| |    
T  42250262 tgtactctagacaaaaagttgtctcatcatggtttagtgagggacaagaatttcggtttttgtccgatccctagcttcctgttttgtctagtcccatgac 42250361  T
Q  187 caatttctaaatcaaa 202  Q
    |||||| |||||||||    
T  42250362 caatttataaatcaaa 42250377  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 202
Target Start/End: Original strand, 33432658 - 33432759
Alignment:
Q  101 caaaaagttttcccatggtttggtgagggacaagaattcttgtttttgttcagtcctttgctacctgttttgtctagtctcatgtccaatttctaaatca 200  Q
    ||||||||| |||||| ||||  |||| ||||   ||||||||||||||||| ||| || | |  |||||||||||||  ||||  ||||||||||||||    
T  33432658 caaaaagttatcccatagtttaatgagagacacacattcttgtttttgttcaatccattaccatttgttttgtctagttccatgatcaatttctaaatca 33432757  T
Q  201 aa 202  Q
    ||    
T  33432758 aa 33432759  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Complemental strand, 844703 - 844675
Alignment:
Q  233 attttttagcaaatcaaacgcaccctaag 261  Q
    |||||||||||||||||||||||||||||    
T  844703 attttttagcaaatcaaacgcaccctaag 844675  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 39717427 - 39717475
Alignment:
Q  90 tgtactctggacaaaaagttttcccatggtttggtgagggacaagaatt 138  Q
    |||||||| ||||||||||| || |||||||| ||||||||||| ||||    
T  39717427 tgtactctagacaaaaagttgtctcatggtttagtgagggacaaaaatt 39717475  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Complemental strand, 40811350 - 40811322
Alignment:
Q  233 attttttagcaaatcaaacgcaccctaag 261  Q
    |||||||||||||||||||||||||||||    
T  40811350 attttttagcaaatcaaacgcaccctaag 40811322  T

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Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 88 - 250
Target Start/End: Complemental strand, 38665604 - 38665442
Alignment:
Q  88 tttgtactctggacaaaaagttttcccatggtttggtgagggacaagaattcttgtttttgttcagtcctttgctacctgttttgt-ctagtctcatgtc 186  Q
    |||||||||| ||||||||||| |||||||||||  ||||||||| ||||| |||||||||| ||||| ||||||||||||||||| | |||| |||| |    
T  38665604 tttgtactcttgacaaaaagttgtcccatggtttaatgagggacatgaattattgtttttgtccagtcatttgctacctgttttgtccaagtc-catgac 38665506  T
Q  187 caatttctaaatcaaacaggttacnnnnnnngttgtccagtcccctattttttagcaaatcaaa 250  Q
    || ||||||||||||| |||  ||       ||||||||||||||| |||| |||| |||||||    
T  38665505 cagtttctaaatcaaaaaggggacaaaaactgttgtccagtcccctgttttctagccaatcaaa 38665442  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 204
Target Start/End: Complemental strand, 27512349 - 27512245
Alignment:
Q  100 acaaaaagttttcccatggtttggtgagggacaagaattcttgtttttgttcagtcctttgctacctgttttgtctagtctcatgtccaatttctaaatc 199  Q
    |||||||||| ||||||||||| |||||||| |||||||| |||||||||   |||| |||||| |||||||||| | || ||||  |||||| ||||||    
T  27512349 acaaaaagttgtcccatggtttagtgagggataagaattcctgtttttgtcttgtcccttgctatctgttttgtccaatcccatgatcaatttttaaatc 27512250  T
Q  200 aaaca 204  Q
    |||||    
T  27512249 aaaca 27512245  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 262
Target Start/End: Original strand, 5442466 - 5442495
Alignment:
Q  233 attttttagcaaatcaaacgcaccctaagt 262  Q
    ||||||||||||||||||||||||||||||    
T  5442466 attttttagcaaatcaaacgcaccctaagt 5442495  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 195
Target Start/End: Complemental strand, 14292445 - 14292338
Alignment:
Q  88 tttgtactctggacaaaaagttttcccatggtttggtgagggacaagaattcttgtttttgttcagtcctttgctacctgttttgtctagtctcatgtcc 187  Q
    ||||||||||| |||||||||| || ||||||||  ||| ||||||| |||| ||||| |||||||||| |||||| |||||||||  |||||||||  |    
T  14292445 tttgtactctgcacaaaaagttgtctcatggtttactgatggacaaggattcatgtttgtgttcagtcccttgctatctgttttgttcagtctcatgatc 14292346  T
Q  188 aatttcta 195  Q
    ||||||||    
T  14292345 aatttcta 14292338  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Original strand, 6386762 - 6386790
Alignment:
Q  233 attttttagcaaatcaaacgcaccctaag 261  Q
    |||||||||||||||||||||||||||||    
T  6386762 attttttagcaaatcaaacgcaccctaag 6386790  T

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Target: scaffold0332 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 203
Target Start/End: Original strand, 722 - 826
Alignment:
Q  99 gacaaaaagttttcccatggtttggtgagggacaagaattcttgtttttgttcagtcctttgctacctgttttgtctagtctcatgtccaatttctaaat 198  Q
    |||||||| || ||||||||||| ||||| ||||||||||| |||||||||  ||||  ||||||| ||||||||| | ||||||| ||  || ||||||    
T  722 gacaaaaaattgtcccatggtttagtgagagacaagaattcatgtttttgtctagtctcttgctacttgttttgtccactctcatgacccgttactaaat 821  T
Q  199 caaac 203  Q
    |||||    
T  822 caaac 826  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 32812544 - 32812484
Alignment:
Q  114 catggtttggtgagggacaagaattcttgtttttgttcagtcctttgctacctgttttgtc 174  Q
    |||||||  ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||    
T  32812544 catggttaagtgagggacaagaattcctgtttttattccgtcctttgctacctgttttgtc 32812484  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 42584454 - 42584374
Alignment:
Q  94 ctctggacaaaaagttttcccatggtttggtgagggacaagaattcttgtttttgttcagtcctttgctacctgttttgtc 174  Q
    |||| ||| ||||||| ||||||||||  ||||||||||||||||| |||||| ||| | ||| |||||||||||||||||    
T  42584454 ctctagactaaaagttatcccatggttaagtgagggacaagaattcatgttttcgttgaatcccttgctacctgttttgtc 42584374  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 206
Target Start/End: Complemental strand, 29615000 - 29614894
Alignment:
Q  100 acaaaaagttttcccatggtttggtgagggacaagaattcttgtttttgttcagtcctttgctacctgttttgtctagtctcatgtccaatttctaaatc 199  Q
    |||||||||| | ||||||||| ||||||||  ||||||| |||||||||  ||| | || |||||| ||||||| | |  |||| ||||||||||||||    
T  29615000 acaaaaagttgtaccatggtttagtgagggatgagaattcatgtttttgtctagttccttactacctattttgtccaattccatgaccaatttctaaatc 29614901  T
Q  200 aaacagg 206  Q
    |||||||    
T  29614900 aaacagg 29614894  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 44954698 - 44954627
Alignment:
Q  102 aaaaagttttcccatggtttggtgagggacaagaattcttgtttttgttcagtcctttgctacctgttttgt 173  Q
    |||||||||| |||| |||| |||||||| || |||||||||||||||  ||||| |||||| || ||||||    
T  44954698 aaaaagtttttccatcgtttagtgagggataaaaattcttgtttttgtctagtcccttgctatctattttgt 44954627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 39433435 - 39433374
Alignment:
Q  88 tttgtactctggacaaaaagttttcccatggtttggtgagggacaagaattcttgtttttgt 149  Q
    ||||||||||||| |||||||| || |  ||||| ||||||||||||||||  |||||||||    
T  39433435 tttgtactctggataaaaagttgtctcgcggtttagtgagggacaagaatttatgtttttgt 39433374  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 11056231 - 11056263
Alignment:
Q  233 attttttagcaaatcaaacgcaccctaagtgat 265  Q
    |||||||||||||||||||||||||||| ||||    
T  11056231 attttttagcaaatcaaacgcaccctaaatgat 11056263  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 7624321 - 7624263
Alignment:
Q  92 tactctggacaaaaagttttcccatggtttggtgagggacaagaattcttgtttttgtt 150  Q
    ||||||||||||||| || || |||| ||| ||||||||||||||||||||||||||||    
T  7624321 tactctggacaaaaaattgtctcatgctttagtgagggacaagaattcttgtttttgtt 7624263  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 262
Target Start/End: Original strand, 17868021 - 17868050
Alignment:
Q  233 attttttagcaaatcaaacgcaccctaagt 262  Q
    ||||||||||||||||||||||||||||||    
T  17868021 attttttagcaaatcaaacgcaccctaagt 17868050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 262
Target Start/End: Original strand, 17877804 - 17877833
Alignment:
Q  233 attttttagcaaatcaaacgcaccctaagt 262  Q
    ||||||||||||||||||||||||||||||    
T  17877804 attttttagcaaatcaaacgcaccctaagt 17877833  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Complemental strand, 15277223 - 15277195
Alignment:
Q  233 attttttagcaaatcaaacgcaccctaag 261  Q
    |||||||||||||||||||||||||||||    
T  15277223 attttttagcaaatcaaacgcaccctaag 15277195  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 14100199 - 14100144
Alignment:
Q  91 gtactctggacaaaaagttttcccatggtttggtgagggacaagaattcttgtttt 146  Q
    |||| ||| |||||||||| ||||||||||||| ||||||||||||||| ||||||    
T  14100199 gtaccctgtacaaaaagttgtcccatggtttggcgagggacaagaattcatgtttt 14100144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 14410216 - 14410161
Alignment:
Q  91 gtactctggacaaaaagttttcccatggtttggtgagggacaagaattcttgtttt 146  Q
    |||| ||| |||||||||| ||||||||||||| ||||||||||||||| ||||||    
T  14410216 gtaccctgtacaaaaagttgtcccatggtttggcgagggacaagaattcatgtttt 14410161  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 10932462 - 10932432
Alignment:
Q  233 attttttagcaaatcaaacgcaccctaagtg 263  Q
    |||||||||||||||||||||||||||||||    
T  10932462 attttttagcaaatcaaacgcaccctaagtg 10932432  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 40753338 - 40753370
Alignment:
Q  226 gtcccctattttttagcaaatcaaacgcaccct 258  Q
    ||||| |||||||||||||||||||||||||||    
T  40753338 gtcccttattttttagcaaatcaaacgcaccct 40753370  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 1319884 - 1319938
Alignment:
Q  102 aaaaagttttcccatggtttggtgagggacaagaattcttgtttttgttcagtcc 156  Q
    |||||||| ||||||||||| |||||||| |||||||| ||||||||| ||||||    
T  1319884 aaaaagttgtcccatggtttagtgagggaaaagaattcatgtttttgtccagtcc 1319938  T

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Target: scaffold0027 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 15358 - 15394
Alignment:
Q  233 attttttagcaaatcaaacgcaccctaagtgatgatg 269  Q
    ||||||||||||||||||||||||||| |||||||||    
T  15358 attttttagcaaatcaaacgcaccctatgtgatgatg 15394  T

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