View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7372_low_17 (Length: 247)
Name: NF7372_low_17
Description: NF7372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7372_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 44014294 - 44014092
Alignment:
| Q |
17 |
cagccttgccattcctcaggtataacacacactaacttcttacatatgtctctgatatacttgatattgaagacttgtttggtgtcgagacatactatat |
116 |
Q |
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| T |
44014294 |
cagccttgccattcctcaggtataacacacactaacttcttacatatgtctccgatatacttgatattgaagacgtgt---gtgtcgagacatactatat |
44014198 |
T |
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| Q |
117 |
ttaattatttcattttgtgaaattaagacgtatctaatgtccactaatgtccaaaaatacgtggttacactcaattattttattttatgtaattaccatt |
216 |
Q |
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||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44014197 |
ttaattatttcattttgtgaaattaagacatat----------ctgatgtccaaaaatacgtggttacactcaattattttattttatgaaattaccatt |
44014108 |
T |
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| Q |
217 |
gatgttagtgtcgtgt |
232 |
Q |
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|||||||||||||||| |
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| T |
44014107 |
gatgttagtgtcgtgt |
44014092 |
T |
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