View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7372_low_2 (Length: 382)
Name: NF7372_low_2
Description: NF7372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7372_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 71 - 274
Target Start/End: Original strand, 38082308 - 38082511
Alignment:
| Q |
71 |
aattgactcttctaattaggaaggggtgtcattgaggcagttaaataaacgcaaaaaggaaaggaaaagaagtactattgtcccacatgaatttttcttc |
170 |
Q |
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| T |
38082308 |
aattgactcttctaattaggaaggggtgtcattgatgcagttaaataaacgcaaaaaggaaaggaaaagaagtactattgtcccacatgaatttttcttc |
38082407 |
T |
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| Q |
171 |
aagtagtacataaatagaaatacatttaaaagtaaagtggaatcacatatactgttcaacatatcttatatggtgcaagtttccaaccaagatactaaca |
270 |
Q |
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| T |
38082408 |
aagcagtacagaaatagaaatacatttaaaagtaaagtggaatcacatatactgttcaacatatcttatatggtgcaagtttccaaccaagatactaaca |
38082507 |
T |
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| Q |
271 |
ttta |
274 |
Q |
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|||| |
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| T |
38082508 |
ttta |
38082511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 288 - 366
Target Start/End: Original strand, 38082672 - 38082751
Alignment:
| Q |
288 |
taggaatattcatcacccaatgtgtgcatccattcaaaatggcgcttcattttctgaaca-atattatattgattggatg |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
38082672 |
taggaatattcatcacccaatgtgtgcatccattcaaaatggtgcttcattttctgaacatttattatattgattggatg |
38082751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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