View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7372_low_20 (Length: 201)
Name: NF7372_low_20
Description: NF7372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7372_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 44 - 183
Target Start/End: Original strand, 43267010 - 43267149
Alignment:
| Q |
44 |
gttgcaattgccataagaggaatctttctatgcactgtgaagccaaacgattcagacatgtccaatccttcagcaccaccaggtaattcccagttaaatt |
143 |
Q |
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| T |
43267010 |
gttgcaattgccataagaggaatctttctatgcactgtgaagccaaacgattcagacatgtccaatccttcagcagcaccaggtaattcccagttaaatt |
43267109 |
T |
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| Q |
144 |
gatgtacaaggtttgccaacacaagatcattgacagccgt |
183 |
Q |
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| T |
43267110 |
gatgtacaaggtttgccaacacaagatcattgacagccgt |
43267149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 44 - 183
Target Start/End: Original strand, 43286811 - 43286950
Alignment:
| Q |
44 |
gttgcaattgccataagaggaatctttctatgcactgtgaagccaaacgattcagacatgtccaatccttcagcaccaccaggtaattcccagttaaatt |
143 |
Q |
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| T |
43286811 |
gttgcaattgccataagaggaatctttctatgcactgtgaagccaaacgattcagacatgtccaatccttcagcagcaccaggtaattcccagttaaatt |
43286910 |
T |
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| Q |
144 |
gatgtacaaggtttgccaacacaagatcattgacagccgt |
183 |
Q |
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| T |
43286911 |
gatgtacaaggtttgccaacacaagatcattgacagccgt |
43286950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 43307610 - 43307738
Alignment:
| Q |
44 |
gttgcaattgccataagaggaatctttctatgcactgtgaagccaaacgattcagacatgtccaatccttcagcaccaccaggtaattcccagttaaatt |
143 |
Q |
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| T |
43307610 |
gttgcaactgccaaaagaggagtctttctatgcatggttaaaccaaatgtttcagacatgtccaaggtttc--caat-ccaggtaattcccaattaaatt |
43307706 |
T |
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| Q |
144 |
gatgtacaaggtttgccaacacaagatcattg |
175 |
Q |
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| T |
43307707 |
gatgtacaaggttggctaacacaagttcattg |
43307738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 43274335 - 43274411
Alignment:
| Q |
104 |
tccaatccttcagcaccaccaggtaattcccagttaaattgatgtacaaggtttgccaacacaagatcattgacagc |
180 |
Q |
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| T |
43274335 |
tccaatcctttagcaccaccaggtaattcccaatcaaattgatgtataagattggctaacacaatttcattggcagc |
43274411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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