View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7372_low_3 (Length: 381)
Name: NF7372_low_3
Description: NF7372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7372_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 144 - 373
Target Start/End: Complemental strand, 54154247 - 54154018
Alignment:
| Q |
144 |
gtgggaattggacaggtgaggagattcaaaggataatttctgtttgttttcttcttttgtttatgagtcaaccttgactcttcttcgtccgatttattga |
243 |
Q |
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| T |
54154247 |
gtgggaattggacaggtgaggagattcaaaggataatttctgtttgttttcttcttttgtttatgagtcaaccttgactcttcttcgtccgatttattga |
54154148 |
T |
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| Q |
244 |
atctactccttttccgactaggcaaattggatttgcgattcttttcgattatcattgttgaataaaggaatcaaaaatcaaattaggcattaatcaaatg |
343 |
Q |
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| T |
54154147 |
atctactccttttccgactaggcaaattggatttgcgattcttttcgattatcattgttgaaaaaaggaatcaaaaatcaaattaggcattaatcaaatg |
54154048 |
T |
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| Q |
344 |
tcggattctcatctccatgggtttcttctc |
373 |
Q |
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| T |
54154047 |
tcggattctcatctccatgggtttcttctc |
54154018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 54154417 - 54154295
Alignment:
| Q |
18 |
cttcctctttgtcaccattgcatcaagaagtcatgtgtatttatggttacccgtaaattaagtattagaaaaagataatcctttttaggtaacctagaca |
117 |
Q |
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| T |
54154417 |
cttcctctttgtcaccattgcatcaagaagtcatgtgtatttatggttacccgtaaattaagtattagaaaaagataatcc-ttttaggtaacctagaca |
54154319 |
T |
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| Q |
118 |
gcagtcacctaaagacagccacaa |
141 |
Q |
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| T |
54154318 |
gcagtcacctaaagacagtcacaa |
54154295 |
T |
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