View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7373_high_1 (Length: 416)

Name: NF7373_high_1
Description: NF7373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7373_high_1
NF7373_high_1
[»] chr1 (14 HSPs)
chr1 (10-416)||(2020757-2021165)
chr1 (10-264)||(2007774-2008028)
chr1 (51-217)||(3217176-3217342)
chr1 (51-196)||(3363965-3364110)
chr1 (51-123)||(3380264-3380336)
chr1 (51-165)||(3366390-3366504)
chr1 (258-411)||(2007561-2007720)
chr1 (54-126)||(2947210-2947282)
chr1 (51-194)||(3374067-3374210)
chr1 (57-126)||(3353406-3353475)
chr1 (51-125)||(3342702-3342776)
chr1 (57-106)||(1794138-1794187)
chr1 (38-147)||(4333563-4333672)
chr1 (51-147)||(6599659-6599755)
[»] chr2 (4 HSPs)
chr2 (38-202)||(20936082-20936246)
chr2 (51-202)||(20954323-20954474)
chr2 (51-196)||(20924478-20924623)
chr2 (38-195)||(39275231-39275388)
[»] chr4 (1 HSPs)
chr4 (51-106)||(21238958-21239013)


Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 10 - 416
Target Start/End: Complemental strand, 2021165 - 2020757
Alignment:
Q  10 gacatcaacttagatccgacgttcaaatcaggcttcacttccatcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2021165 gacatcaacttagatccgacgttcaaatcaggcttcacttccatcttttctagcataggcgaatagagaagtagaaatctcaaaaaatctaattcagctt 2021066  T
Q  110 tcataccagagatgccttcaatcaacacatgtcgcacttggatgggtatggatggctccaaaaagacattttcccaacaaaaggaggcaggtgctaaaac 209  Q
    ||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2021065 tcataccagagatgccttcaatacacacatgtcacacttggatgggtatggatggctccaaaaagacattttcccaacaataggaggcaggtgctaaaac 2020966  T
Q  210 gacagtattctcctcctgtactgcctacatgaaattgtgccaaatccataaatcatattgtattgatcgatacaacatgaataggaagatacatgagtct 309  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2020965 gaccgtattctcctcctgtgctgcctacatgaaattgtgccaaatccataaatcatattgtattgattgatacaacatgaataggaagatacatgagtct 2020866  T
Q  310 gatt--tataggacgctaatccaattaatcgtaactatacctatattgaacccaacgcataacttctgtaggcaatcgtaacccaagtgtacaagtttta 407  Q
    ||||  |||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  2020865 gatttatataggactctaatgcaataaatcgtaactatacctatattgaacccaacgcataacttctgcaggcaatcgtaactcaagtgtacaagtttta 2020766  T
Q  408 gaaactaac 416  Q
    |||||||||    
T  2020765 gaaactaac 2020757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 2008028 - 2007774
Alignment:
Q  10 gacatcaacttagatccgacgttcaaatcaggcttcacttccatcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctt 109  Q
    ||||||||||| ||||| ||||| ||||  |||||||||  |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||    
T  2008028 gacatcaacttcgatccaacgttaaaattgggcttcactctcatcttttctagcacaggcgaatggagaagtagaaatctcataaaatctaattcagatt 2007929  T
Q  110 tcataccagagatgccttcaatcaacacatgtcgcacttggatgggtatggatggctccaaaaagacattttcccaacaaaaggaggcaggtgctaaaac 209  Q
    | || ||||||||||||||||||   |||||||||||| || || | ||||||||||||| ||||| || |||||| |||||| |||| |||||||||||    
T  2007928 tgatgccagagatgccttcaatccctacatgtcgcactcgggtgagcatggatggctccagaaagatatcttcccagcaaaagaaggcgggtgctaaaac 2007829  T
Q  210 gacagtattctcctcctgtactgcctacatgaaattgtgccaaatccataaatca 264  Q
    || ||| |||| ||| |||  |||||||||| ||||||  |||||| ||||||||    
T  2007828 gatagttttcttctcatgttttgcctacatgcaattgttacaaatctataaatca 2007774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 51 - 217
Target Start/End: Original strand, 3217176 - 3217342
Alignment:
Q  51 catcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatgccttcaatcaacacatgtcgcacttgg 150  Q
    ||||||||||||||| || ||||| | |||||||||||| |||||||||||||||| | |  |  ||||||| ||||  ||   |||||| |||||| ||    
T  3217176 catcttttctagcatgggagaatacataagtagaaatctgataaaatctaattcagatgtattgtcagagattccttttatgctcacatggcgcactcgg 3217275  T
Q  151 atgggtatggatggctccaaaaagacattttcccaacaaaaggaggcaggtgctaaaacgacagtat 217  Q
    | ||| | || ||||||||||||||||| || ||||||| ||||||| |||| ||||| | ||||||    
T  3217276 aggggcacgggtggctccaaaaagacatctttccaacaataggaggcgggtgttaaaaggtcagtat 3217342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 51 - 196
Target Start/End: Complemental strand, 3364110 - 3363965
Alignment:
Q  51 catcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatgccttcaatcaacacatgtcgcacttgg 150  Q
    |||||||||||| | ||| ||||| | ||| |||||||| |||||||||||||||| ||| |  ||||||||||| |  |||  ||||||||||||||      
T  3364110 catcttttctagtacaggagaatataaaagcagaaatctgataaaatctaattcagatttaaagccagagatgccatgcatcctcacatgtcgcacttca 3364011  T
Q  151 atgggtatggatggctccaaaaagacattttcccaacaaaaggagg 196  Q
    ||||| || | ||||||| |||| | ||||||||||||| ||||||    
T  3364010 atgggcattgttggctccgaaaatatattttcccaacaataggagg 3363965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 3380336 - 3380264
Alignment:
Q  51 catcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatg 123  Q
    |||||||||||||||||| ||||||||||||||||| |  |||||||||||||| | ||| ||||||||||||    
T  3380336 catcttttctagcataggagaatagagaagtagaaaccgaataaaatctaattccgatttgataccagagatg 3380264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 3366504 - 3366390
Alignment:
Q  51 catcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatgccttcaatcaacacatgtcgcacttgg 150  Q
    |||||| ||||||||||| |||||| |||||||||| |  |||||||||| ||| | ||| |||||||||||||| || ||   ||||||||||||| |     
T  3366504 catcttgtctagcataggagaatagcgaagtagaaaccgaataaaatctagttccgatttgataccagagatgccatctattgtcacatgtcgcactcga 3366405  T
Q  151 atgggtatggatggc 165  Q
    ||||| |||| ||||    
T  3366404 atgggcatggctggc 3366390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 411
Target Start/End: Complemental strand, 2007720 - 2007561
Alignment:
Q  258 taaatcatattgtattgatcgatacaacatgaataggaagatacatgagtct--gatttataggacgctaatccaattaatc-gtaacta----taccta 350  Q
    ||||||||||||||||||| |||| || ||||| | ||||||||||||||||  ||||||||||   ||| | || | |||| |||||||    ||||||    
T  2007720 taaatcatattgtattgattgata-aagatgaaaaagaagatacatgagtctctgatttatagggttctactgcactaaatctgtaactaactctaccta 2007622  T
Q  351 tattgaacccaacgcataacttctgtaggcaatcgtaacccaagtgtacaagttttagaaa 411  Q
     ||||||||  ||    |||||||| ||||||||||||| |||||||||||||||||||||    
T  2007621 aattgaacctgacttggaacttctgcaggcaatcgtaactcaagtgtacaagttttagaaa 2007561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 126
Target Start/End: Original strand, 2947210 - 2947282
Alignment:
Q  54 cttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatgcct 126  Q
    |||||||||||| || ||||  ||||| |||||||| |||||||||||||||| ||| |||||||| ||||||    
T  2947210 cttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccagaaatgcct 2947282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 194
Target Start/End: Complemental strand, 3374210 - 3374067
Alignment:
Q  51 catcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatgccttcaatcaacacatgtcgcacttgg 150  Q
    |||||||||||||| ||| |||||  |||||||||| |  |||||||||||||| | | | |||||||||||||| || ||   ||||||| | |||||     
T  3374210 catcttttctagcacaggagaatatcgaagtagaaaccgaataaaatctaattctgatctgataccagagatgccatctattgtcacatgttgtacttga 3374111  T
Q  151 atgggtatggatggctccaaaaagacattttcccaacaaaagga 194  Q
    ||||| |||| |||| |  |||||| || |||||||||| ||||    
T  3374110 atgggcatggctggccctgaaaagatatcttcccaacaatagga 3374067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 3353475 - 3353406
Alignment:
Q  57 ttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatgcct 126  Q
    ||||||||| || ||||  ||||| |||||||| |||||||||||||||| ||| |||||||| ||||||    
T  3353475 ttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccagaaatgcct 3353406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 125
Target Start/End: Complemental strand, 3342776 - 3342702
Alignment:
Q  51 catcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatgcc 125  Q
    ||||||||||||   ||| ||||| ||||||||||||   |||||||||||||||| |||  |||||||||||||    
T  3342776 catcttttctagatcaggagaatatagaagtagaaattggataaaatctaattcagatttggtaccagagatgcc 3342702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 1794187 - 1794138
Alignment:
Q  57 ttctagcataggcgaatagagaagtagaaatctcataaaatctaattcag 106  Q
    |||||| | ||| ||||| |||||||||||||| ||||||||||||||||    
T  1794187 ttctaggacaggagaatatagaagtagaaatctgataaaatctaattcag 1794138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 4333563 - 4333672
Alignment:
Q  38 caggcttcacttccatcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatgccttcaatcaacac 137  Q
    ||||||||||   ||||||||||||||   | ||||| |||||||||||||| || |||| ||||||||  |   ||||||||||||| || |||  |||    
T  4333563 caggcttcacaatcatcttttctagcaccagagaatatagaagtagaaatctgatcaaatttaattcagactgggtaccagagatgccatctatcgtcac 4333662  T
Q  138 atgtcgcact 147  Q
    ||||||||||    
T  4333663 atgtcgcact 4333672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 6599659 - 6599755
Alignment:
Q  51 catcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatgccttcaatcaacacatgtcgcact 147  Q
    |||| ||||||||| ||| ||||| ||||||| ||| || || || ||||| |||| ||| |||||||||||||| || ||   |||||||||||||    
T  6599659 catcctttctagcacaggagaatatagaagtataaagctgatgaagtctaactcaggtttgataccagagatgccatctattctcacatgtcgcact 6599755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 38 - 202
Target Start/End: Complemental strand, 20936246 - 20936082
Alignment:
Q  38 caggcttcacttccatcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatgccttcaatcaacac 137  Q
    ||||||||||   |||||||||||||| ||| ||||| |||||||||||| | ||||||||||||||   |||  ||||| ||||||| || |||  |||    
T  20936246 caggcttcacagtcatcttttctagcacaggagaatatagaagtagaaatttgataaaatctaattccaatttgttaccaaagatgccatctatcgtcac 20936147  T
Q  138 atgtcgcacttggatgggtatggatggctccaaaaagacattttcccaacaaaaggaggcaggtg 202  Q
    |||||||||| | ||||| |||| |||| || ||||||  |||||||||||| |||  |||||||    
T  20936146 atgtcgcactcgaatgggcatggctggcgccgaaaagattttttcccaacaataggcagcaggtg 20936082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 51 - 202
Target Start/End: Complemental strand, 20954474 - 20954323
Alignment:
Q  51 catcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatgccttcaatcaacacatgtcgcacttgg 150  Q
    ||||||||||||||| || ||||| |||||||||||| | ||||||||||||||    ||  ||||| ||||||| ||||||  |||||||||||||||     
T  20954474 catcttttctagcatgggagaatatagaagtagaaatttgataaaatctaattccaaattggtaccaaagatgccatcaatcgccacatgtcgcacttga 20954375  T
Q  151 atgggtatggatggctccaaaaagacattttcccaacaaaaggaggcaggtg 202  Q
    ||||| |||| |||  || |||| | || |||||||||| ||| ||||||||    
T  20954374 atgggcatggctggtgccgaaaatatatcttcccaacaataggcggcaggtg 20954323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 196
Target Start/End: Complemental strand, 20924623 - 20924478
Alignment:
Q  51 catcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatgccttcaatcaacacatgtcgcacttgg 150  Q
    ||||||||  |||| ||| |||||||||||||||||||| |||||||||||||||| |||  ||||||||||| |||  |||  ||||||| ||| || |    
T  20924623 catctttttgagcacaggtgaatagagaagtagaaatctgataaaatctaattcagatttggtaccagagatgtcttgtatctccacatgttgcaatttg 20924524  T
Q  151 atgggtatggatggctccaaaaagacattttcccaacaaaaggagg 196  Q
    | | | ||   ||||||| |||||| || |||||||||| ||||||    
T  20924523 aggagcatatctggctccgaaaagatatcttcccaacaataggagg 20924478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 195
Target Start/End: Complemental strand, 39275388 - 39275231
Alignment:
Q  38 caggcttcacttccatcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagagatgccttcaatcaacac 137  Q
    ||||||||||   ||| |||||||||||||| ||||| |  || |||||| | |||||||||||||||| ||| || |||| ||||||  | ||   |||    
T  39275388 caggcttcacaatcattttttctagcataggagaatacatgagaagaaatttgataaaatctaattcagatttgatgccagcgatgccacctatgcccac 39275289  T
Q  138 atgtcgcacttggatgggtatggatggctccaaaaagacattttcccaacaaaaggag 195  Q
    |||||| ||||||||||| |||| |||| |  |||||  || |||||||||| |||||    
T  39275288 atgtcgaacttggatgggcatggctggccctgaaaaggtatcttcccaacaataggag 39275231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 21239013 - 21238958
Alignment:
Q  51 catcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcag 106  Q
    ||||||||||| |||||| |||| ||||||||||||||| ||||||||||| ||||    
T  21239013 catcttttctaacataggagaattgagaagtagaaatctgataaaatctaactcag 21238958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University