View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7373_low_1 (Length: 556)
Name: NF7373_low_1
Description: NF7373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7373_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 18 - 541
Target Start/End: Original strand, 41878554 - 41879078
Alignment:
| Q |
18 |
attctaactttgtattgtataaacctcctataaataaaaaccaccttacactttgtattttatgacatacatcataaacataaataa-ctttctttgtag |
116 |
Q |
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| T |
41878554 |
attctaactttgtattgtataaacctcctataaataaaaaccaccttgcactttgtattgtataacatacatcataaacataaataaactttctttgtag |
41878653 |
T |
|
| Q |
117 |
caagcaacaatgaagccaatcgacgagaaacaagagacggtaacaataagagcagtgagtcacgacgaagaaggaaaaaagagagttgaaaaaacagaac |
216 |
Q |
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| T |
41878654 |
caagcagcaatgaagccaatcgacgagaaacaagagacggtaacaataagagcagtgagtcacgacgaagaaggaaaaaagagagttgaaaaaacagaac |
41878753 |
T |
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| Q |
217 |
tcaacacacacaacatagacacaatcaaacatgtggagaagaaactcatcaacaacggtgtccaacgtctggaccgccaccctgtcgacggcataggcat |
316 |
Q |
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| T |
41878754 |
taaacacacacaacatagacacaatcaaacatgtggagaagaaactcatcaacaacggtgtccaacgtctggaccgccaccctgtcgacggcataggcat |
41878853 |
T |
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| Q |
317 |
tggccgcggaccgccgaagtctggtcgtggtggtaagtttacttgggaaggtccggctgatatggttgataatatgcttgatccggcgccggcggctatg |
416 |
Q |
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| T |
41878854 |
tggccgtggaccgccgaagtctggtcgtggtggtaagtttacttgggaaggtccggctgatatggttgataatatgcttgatccggcgccggcggctatg |
41878953 |
T |
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| Q |
417 |
gatgagaatgatcctaattatgtagacgaggaagatggagaggatgctgctaaggagttgattgttggtgaggttgatgttgctaaggttggtggggaaa |
516 |
Q |
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| T |
41878954 |
gatgagaatgatcctaattatgtagacgaggaagatggagaggatgctgctaaggagttgattgttggtgatgttgatgttgctaaggttggtggggaaa |
41879053 |
T |
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| Q |
517 |
gagatggtgttgctagagttgatgt |
541 |
Q |
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| T |
41879054 |
gagatggtgttgctagagttgatgt |
41879078 |
T |
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