View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7373_low_3 (Length: 396)

Name: NF7373_low_3
Description: NF7373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7373_low_3
NF7373_low_3
[»] chr1 (1 HSPs)
chr1 (14-385)||(34900536-34900908)
[»] chr2 (4 HSPs)
chr2 (62-160)||(26894639-26894737)
chr2 (62-160)||(26900078-26900176)
chr2 (62-160)||(4405789-4405887)
chr2 (224-278)||(20023954-20024008)
[»] scaffold0012 (1 HSPs)
scaffold0012 (37-142)||(183182-183286)
[»] chr6 (1 HSPs)
chr6 (62-160)||(9814699-9814797)
[»] chr7 (3 HSPs)
chr7 (61-112)||(29467354-29467405)
chr7 (56-118)||(30944960-30945022)
chr7 (62-118)||(30943933-30943989)


Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 385
Target Start/End: Original strand, 34900536 - 34900908
Alignment:
Q  14 atcaaagggatgtaaactccttaattgagaaatatcttatgtttttgtttttgaatcgagagaaaagagttatatgttagatgaagccaccactaagggg 113  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  34900536 atcaaagagatgtaaactccttaattgagaaatatcttatgtttttgtttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggga 34900635  T
Q  114 aagacagctcttaggagaaaagagctatcgatgaaatggaactagttttcgcctcactggttatgattatattgttaaattgagttttttctacacttta 213  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||  |||||||||||||||||||||||||    
T  34900636 aagacagctcttagaagaaaagagctatcaatgaaatggaactagttctcgcctcactcgttatgattatattactaaattgagttttttctacacttta 34900735  T
Q  214 ttttaaaaaagttatttttgattccacctccttacaacgttggaatttcttttgaaatatttttatttaattgacaacttttacaaactttataagtttt 313  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34900736 ttttaaaaaagttatttttgattccacctccttacaacgttcgaatttcttttgaaatatttttatttaattgacaacttttacaaactttataagtttt 34900835  T
Q  314 caaatatacaac-gattgtgaattaaataaatgtttgtgcctttgtgtggttctcttctagctaatggtgatg 385  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34900836 caaatatacaactgattgtgaattaaataaatgtttgtgcctttgtgtggttctcttctagctaatggtgatg 34900908  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 160
Target Start/End: Complemental strand, 26894737 - 26894639
Alignment:
Q  62 ttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagacagctcttaggagaaaagagctatcgatgaaatggaactagtt 160  Q
    |||||| |||||||||||||||||| ||||||||||||| ||||||||| | ||| |  ||||||| || ||||||||||| | || ||||| ||||||    
T  26894737 ttttgagtcgagagaaaagagttatctgttagatgaagctaccactaagagaaaggccactcttagcaggaaagagctatcaacgagatggagctagtt 26894639  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 160
Target Start/End: Complemental strand, 26900176 - 26900078
Alignment:
Q  62 ttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagacagctcttaggagaaaagagctatcgatgaaatggaactagtt 160  Q
    |||||| |||||||||||||||||| ||||||||||||| ||||||||| | ||| |  ||||||| || ||||||||||| | || ||||| ||||||    
T  26900176 ttttgagtcgagagaaaagagttatctgttagatgaagctaccactaagagaaaggccactcttagcaggaaagagctatcaacgagatggagctagtt 26900078  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 4405789 - 4405887
Alignment:
Q  62 ttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagacagctcttaggagaaaagagctatcgatgaaatggaactagtt 160  Q
    |||||| |||||||||||||| |||  |||||||||||| ||||||||||| ||| |  ||||||| || ||||||||||| | || ||||| ||||||    
T  4405789 ttttgagtcgagagaaaagagctatccgttagatgaagctaccactaagggaaaggccactcttagtaggaaagagctatcaacgagatggagctagtt 4405887  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 278
Target Start/End: Complemental strand, 20024008 - 20023954
Alignment:
Q  224 gttatttttgattccacctccttacaacgttggaatttcttttgaaatattttta 278  Q
    ||||||| |||||||| ||| |||||||||| || ||||||||||||||||||||    
T  20024008 gttatttctgattccatctctttacaacgtttgattttcttttgaaatattttta 20023954  T

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Target: scaffold0012 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 142
Target Start/End: Complemental strand, 183286 - 183182
Alignment:
Q  37 attgagaaatatcttatgtttttgtttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagacagctcttaggagaaaaga 136  Q
    ||||| |||||| ||| ||||||||||| || |||||||||||||||||| |||||| || ||| |||||||| || |||    ||||||||||||||||    
T  183286 attgaaaaatattttacgtttttgtttt-gagtcgagagaaaagagttatttgttaggtggagctaccactaaaggaaaggtcactcttaggagaaaaga 183188  T
Q  137 gctatc 142  Q
    ||||||    
T  183187 gctatc 183182  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 9814699 - 9814797
Alignment:
Q  62 ttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagacagctcttaggagaaaagagctatcgatgaaatggaactagtt 160  Q
    |||||| |||||||||||||| |||  |||||||||||| ||||||||| | ||| |  ||||||| || ||||||||||| | || ||||| ||||||    
T  9814699 ttttgagtcgagagaaaagagctatccgttagatgaagctaccactaagagaaaggccactcttagtaggaaagagctatcaacgagatggagctagtt 9814797  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 29467405 - 29467354
Alignment:
Q  61 tttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggg 112  Q
    ||||||| |||||||||||||| ||| ||||||||||| | |||||||||||    
T  29467405 tttttgagtcgagagaaaagagatatctgttagatgaatctaccactaaggg 29467354  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 30944960 - 30945022
Alignment:
Q  56 ttttgtttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagac 118  Q
    |||| ||||| | |||||||||||||| ||| ||||||||| ||| ||||||||||| |||||    
T  30944960 tttttttttttagtcgagagaaaagagctatctgttagatggagctaccactaagggaaagac 30945022  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 30943933 - 30943989
Alignment:
Q  62 ttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagac 118  Q
    |||||| |||||||||||||| |||  |||||||| ||| ||||||||||| |||||    
T  30943933 ttttgagtcgagagaaaagagctatccgttagatggagctaccactaagggaaagac 30943989  T

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