View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7373_low_7 (Length: 246)
Name: NF7373_low_7
Description: NF7373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7373_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 51855247 - 51855487
Alignment:
| Q |
1 |
ccaaaattgttcttgagctgcaagttaagataaaaacattagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattatttaaacatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51855247 |
ccaaaattgttcttgagctgcaagttaagataaaaacaaaagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattatttaaacatta |
51855346 |
T |
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| Q |
101 |
aacagaattaagtttgtccaataacttgctagatctggtctctgccagccacttcccaatcaagcgatatacatctgaaacctcttcattactttgataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51855347 |
aacagaattaagtttgtccaataacttgctagatctgatctctgccagccacttcccaatcaagcgatatacatctgaaacctcttcattactttgataa |
51855446 |
T |
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| Q |
201 |
ttttgtgatatgtacattccaaggttgatgtccatctcatt |
241 |
Q |
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| T |
51855447 |
ttttgtgatatgtacattccaaggttgatagccatctcatt |
51855487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 35043234 - 35042994
Alignment:
| Q |
1 |
ccaaaattgttcttgagctgcaagttaagataaaaacattagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattatttaaacatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35043234 |
ccaaaattgttcttgagctgcaagttaagataaaaacaggagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattatttaaacatta |
35043135 |
T |
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| Q |
101 |
aacagaattaagtttgtccaataacttgctagatctggtctctgccagccacttcccaatcaagcgatatacatctgaaacctcttcattactttgataa |
200 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35043134 |
aacagaattcagtttgtccaataacttgctagatctggtctctgccagccacttcccaatcaagcgatatacatccgaaacctcttcattactttgataa |
35043035 |
T |
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| Q |
201 |
ttttgtgatatgtacattccaaggttgatgtccatctcatt |
241 |
Q |
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| T |
35043034 |
ttttgtgatatgtacattccaaggttgatagccatctcatt |
35042994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 8944482 - 8944678
Alignment:
| Q |
1 |
ccaaaattgttcttgagctgcaagttaagataaaaacattagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattatttaaacatta |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8944482 |
ccaaaattgttcttgagctgcaagttaagataaaaacattagaagacatgaactcaaatgagtcaggcatcacaggggagcatccattatttaaacatta |
8944581 |
T |
|
| Q |
101 |
aacagaattaagtttgtccaataacttgctagatctggtctctgccagccacttcccaatcaagcgatatacatctgaaacctcttcattactttga |
197 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8944582 |
aacagaattaagtttgtccaataacttgctacatctggtctctgccagccacttcccaatcaagcgatatacatctgaaacctcttcattactttga |
8944678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 1869515 - 1869574
Alignment:
| Q |
172 |
catctgaaacctcttcattactttgata--attttgtgatatgtacattccaaggttgat |
229 |
Q |
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|||||||| |||||||||||||||||| |||| ||||||||||||| | ||||||||| |
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| T |
1869515 |
catctgaagtctcttcattactttgataatatttggtgatatgtacatcctaaggttgat |
1869574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 26887177 - 26887003
Alignment:
| Q |
1 |
ccaaaattgttcttgagctgcaagttaagataaaaacattagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattatttaaacatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26887177 |
ccaaaattgttcttgagctgcaagttaagataaaaacattagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattatttaaacatta |
26887078 |
T |
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| Q |
101 |
aacagaattaagtttgtccaataacttgctagatctggtctctgccagccacttcccaatcaagcgatatacatc |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26887077 |
aacagaattaagtttgtccaataacttgctagatctggtctctgccggccacttcccaatcaagcgatatacatc |
26887003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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