View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7374_high_1 (Length: 721)

Name: NF7374_high_1
Description: NF7374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7374_high_1
NF7374_high_1
[»] chr1 (5 HSPs)
chr1 (17-413)||(38797705-38798101)
chr1 (575-704)||(38797443-38797572)
chr1 (431-510)||(38797636-38797717)
chr1 (474-510)||(30557544-30557580)
chr1 (441-510)||(7524120-7524191)
[»] chr4 (2 HSPs)
chr4 (432-502)||(55186979-55187049)
chr4 (474-510)||(16551997-16552033)
[»] chr6 (2 HSPs)
chr6 (432-510)||(4910906-4910986)
chr6 (432-509)||(765396-765473)
[»] chr5 (4 HSPs)
chr5 (430-510)||(9818730-9818813)
chr5 (432-510)||(42858106-42858186)
chr5 (430-510)||(18851089-18851171)
chr5 (430-509)||(36290031-36290112)
[»] chr7 (2 HSPs)
chr7 (432-510)||(41386822-41386902)
chr7 (432-510)||(15903539-15903617)
[»] chr8 (2 HSPs)
chr8 (432-510)||(13384661-13384741)
chr8 (428-510)||(32927886-32927970)


Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 413
Target Start/End: Complemental strand, 38798101 - 38797705
Alignment:
Q  17 taatacttgagagagaatgttgatgtgtgagttggaaataacatattggatggaagagtaaggttgaacaacatatgtgagaaggttgatatagttaata 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38798101 taatacttgagagagaatgttgatgtgtgagttggaaataacatattggatggaagagtaagattgaacaacatatgtgagaaggttgatatagttaata 38798002  T
Q  117 tcttagattttaggttaagatatgatgttcaaaataacttttgtggttgctcttagtcatatgannnnnnnnctaaacggtcaacattagtatgttatcc 216  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||        |||||||||||||||||||||||||| |    
T  38798001 tcttagattttaggttaagatatgatgttcaaactaacttttgtggttgctcttagtcatatgattttttttctaaacggtcaacattagtatgttattc 38797902  T
Q  217 catttgttaatttttaagtgtcctttggtcgtttttcacatgtatcaaaacaactaataatatcattacttatgatactattatttctattttacctata 316  Q
    || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38797901 cagttgttaatttttaagtgtccttttgtcgtttttcacatgtatcaaaacaactaataatatcattacttatgatactattatttatattttacctata 38797802  T
Q  317 ttaccttaaccatttattatctcatccgtaaatatatgacggttttgagattatttttaaaaggtataattggttatgcctccttaattgattatac 413  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  38797801 ttaccttaaccatttattatctcatccctaaatatatgacagttttgagattatttctaaaaggtagaattggttatgcctccttaattgattatac 38797705  T

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Target: chr1; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 575 - 704
Target Start/End: Complemental strand, 38797572 - 38797443
Alignment:
Q  575 tatctcgttgcagagcttagtgttgtgggctcctccataagtcctttcacatgtctcataaactcttaacaaggatgactccctttcaagagaaaagcaa 674  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38797572 tatctcgctgcagagcttagtgttgtgggctcctccataagtccttgcacatgtctcatagactcttaacaaggatgactccctttcaagagaaaagcaa 38797473  T
Q  675 ggattactcaagaagcattaatattccttc 704  Q
    ||||||||||||||||||||||||||||||    
T  38797472 ggattactcaagaagcattaatattccttc 38797443  T

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Target: chr1; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 431 - 510
Target Start/End: Complemental strand, 38797717 - 38797636
Alignment:
Q  431 taattgattatacttgaagttatgatttgtaacttctaaatcaagaattgattttca--cacaaatttatagttcaactcac 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  38797717 taattgattatacttgaagttatgatttgtaacttctaaatcaagaattgattttcacacacaaatttatagttcaactcac 38797636  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 474 - 510
Target Start/End: Original strand, 30557544 - 30557580
Alignment:
Q  474 agaattgattttcacacaaatttatagttcaactcac 510  Q
    |||||||||||||||||||||||||||||||||||||    
T  30557544 agaattgattttcacacaaatttatagttcaactcac 30557580  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 441 - 510
Target Start/End: Original strand, 7524120 - 7524191
Alignment:
Q  441 tacttgaagttatgatttgtaacttctaaatcaagaattgatttt--cacacaaatttatagttcaactcac 510  Q
    |||||||||||| |||||||| ||| | | |  ||||||||||||  |||||||||||||||||||||||||    
T  7524120 tacttgaagttaggatttgtagcttttgattatagaattgatttttacacacaaatttatagttcaactcac 7524191  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 432 - 502
Target Start/End: Complemental strand, 55187049 - 55186979
Alignment:
Q  432 aattgattatacttgaagttatgatttgtaacttctaaatcaagaattgattttcacacaaatttatagtt 502  Q
    |||||||| |||||||||||| |||||||||||| ||| |  |||||||||||||||||| ||||||||||    
T  55187049 aattgattctacttgaagttaggatttgtaacttttaattatagaattgattttcacacatatttatagtt 55186979  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 474 - 510
Target Start/End: Original strand, 16551997 - 16552033
Alignment:
Q  474 agaattgattttcacacaaatttatagttcaactcac 510  Q
    |||||||||||||||||||||||||||||||||||||    
T  16551997 agaattgattttcacacaaatttatagttcaactcac 16552033  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 432 - 510
Target Start/End: Original strand, 4910906 - 4910986
Alignment:
Q  432 aattgattatacttgaagttatgatttgtaacttctaaatcaagaattgattttcac--acaaatttatagttcaactcac 510  Q
    |||||||| ||||||||| ||||||||||| ||| | | || |||||||||||||||  ||||||||||||||| ||||||    
T  4910906 aattgattctacttgaagctatgatttgtagcttttgattctagaattgattttcacatacaaatttatagttcgactcac 4910986  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 432 - 509
Target Start/End: Complemental strand, 765473 - 765396
Alignment:
Q  432 aattgattatacttgaagttatgatttgtaacttctaaatcaagaattgattttcacacaaatttatagttcaactca 509  Q
    |||||||| ||||||||| ||||||||||| ||| | | || |||||||||| | | | |||||||||||||||||||    
T  765473 aattgattctacttgaagctatgatttgtagcttttgattctagaattgattattaaagaaatttatagttcaactca 765396  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 430 - 510
Target Start/End: Original strand, 9818730 - 9818813
Alignment:
Q  430 ataattgattatacttgaagttatgatttgtaacttctaaatcaagaattgatttt---cacacaaatttatagttcaactcac 510  Q
    |||||||||| ||||||||| ||||||||||| ||| | | || ||||||||||||    ||||||||||||||||||||||||    
T  9818730 ataattgattctacttgaagctatgatttgtagcttttgattctagaattgattttttaaacacaaatttatagttcaactcac 9818813  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 432 - 510
Target Start/End: Original strand, 42858106 - 42858186
Alignment:
Q  432 aattgattatacttgaagttatgatttgtaacttctaaatcaagaattgatttt--cacacaaatttatagttcaactcac 510  Q
    |||||||| |||||||||||| |||||| | ||| ||| || | ||||||||||  |||||||||||||||||||||||||    
T  42858106 aattgattttacttgaagttaggatttggagcttttaattctataattgattttcacacacaaatttatagttcaactcac 42858186  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 430 - 510
Target Start/End: Complemental strand, 18851171 - 18851089
Alignment:
Q  430 ataattgattatacttgaagttatgatttgtaacttctaaatcaagaattgatttt--cacacaaatttatagttcaactcac 510  Q
    |||||||||| ||||||||| ||||||||||| ||| | | |  ||||||||||||  |||||| |||||||||| |||||||    
T  18851171 ataattgattctacttgaagctatgatttgtagcttttgattatagaattgattttcacacacatatttatagttaaactcac 18851089  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 430 - 509
Target Start/End: Original strand, 36290031 - 36290112
Alignment:
Q  430 ataattgattatacttgaagttatgatttgtaacttctaaatcaagaattgattttc--acacaaatttatagttcaactca 509  Q
    ||||||||||||||||||||||| ||||||| | || | | || | | |||||||||  ||||| |||||||||||||||||    
T  36290031 ataattgattatacttgaagttaagatttgttagttttgattccatatttgattttcagacacatatttatagttcaactca 36290112  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 432 - 510
Target Start/End: Complemental strand, 41386902 - 41386822
Alignment:
Q  432 aattgattatacttgaagttatgatttgtaacttctaaatcaagaattgatttt--cacacaaatttatagttcaactcac 510  Q
    |||||||| ||||||||| || |||||||| ||| ||| || ||||||||| ||  |||||||||||||| ||||||||||    
T  41386902 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatatttacacacaaatttataattcaactcac 41386822  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 432 - 510
Target Start/End: Complemental strand, 15903617 - 15903539
Alignment:
Q  432 aattgattatacttgaagttatgatttgtaacttctaaatcaagaattgattttcacacaaatttatagttcaactcac 510  Q
    ||||||||||||||||||||  |||||||| ||| | || |   ||||||||||||||||| ||| |||||||| ||||    
T  15903617 aattgattatacttgaagttgggatttgtagcttttgaagcttcaattgattttcacacaagtttctagttcaaatcac 15903539  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 432 - 510
Target Start/End: Complemental strand, 13384741 - 13384661
Alignment:
Q  432 aattgattatacttgaagttatgatttgtaacttctaaatcaagaattgattttcacaca--aatttatagttcaactcac 510  Q
    |||||||| || |||||| ||  ||||||| ||| | | || ||||||||||||||||||  |||||||||||||||||||    
T  13384741 aattgattctatttgaagctaaaatttgtagcttttgattctagaattgattttcacacacaaatttatagttcaactcac 13384661  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 428 - 510
Target Start/End: Original strand, 32927886 - 32927970
Alignment:
Q  428 caataattgattatacttgaagttatgatttgtaacttctaaatcaagaattgatttt--cacacaaatttatagttcaactcac 510  Q
    ||||| |||||| ||||||||| || |||||||| ||| | | |  |||||| |||||  |||||||||||||||||||||||||    
T  32927886 caatagttgattctacttgaagctaggatttgtagcttttgattatagaattcatttttacacacaaatttatagttcaactcac 32927970  T

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