View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7374_low_10 (Length: 343)
Name: NF7374_low_10
Description: NF7374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7374_low_10 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 325
Target Start/End: Complemental strand, 22513813 - 22513495
Alignment:
| Q |
8 |
ttggtggtcataactatgctggtaatttaatcacatttaatcatggaccagatggaaaaattatgggtcattggtatggctatgttacttgtaatgatgt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
22513813 |
ttggtggtcataactatgctggtaatttaatcacatttaatcatggaccagatggaaaaattatgggtcattggtatggctatgttactcgtaatgatgt |
22513714 |
T |
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| Q |
108 |
gcttaccttgctagaccaacacattgccaaggaaaggatcggctacaaattgaattcaattgatatag-aaaatatgaaagctggtttacaacaagcagt |
206 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||| | |
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| T |
22513713 |
gcttgccttgctagaccaacacattgccaaggaaaggatcggctacaaattgaattcaattgatagggaaaaatatgagagctggtttacaacaagcaat |
22513614 |
T |
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| Q |
207 |
gaggattctaataacagaaggaacagttgaagtagaaacacgcagaagtgatgcgtcaaagtttttacatgtgaatgaaaaagagaacaatggttgcagt |
306 |
Q |
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| T |
22513613 |
gaggattctgatagcagcaggaacagttgaagtagaaacacgcagaagtgatgcgtcaaagtttttacatgtgaatgaaaaagagaacaatggttgcggt |
22513514 |
T |
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| Q |
307 |
ataattacacaatgtaatt |
325 |
Q |
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| T |
22513513 |
ataattacacaatgtaatt |
22513495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 416794 - 416868
Alignment:
| Q |
8 |
ttggtggtcataactatgctggtaatttaatcacatttaatcatggaccagatggaaaaattatgggtcattggt |
82 |
Q |
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| T |
416794 |
ttggtggtcataagtatgctggcaatttaatcacatttagtcatggaccagatggaaaaattatgggtcattggt |
416868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 416960 - 417019
Alignment:
| Q |
80 |
ggtatggctatgttacttgtaatgatgtgcttaccttgctagaccaacacattgccaagg |
139 |
Q |
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| T |
416960 |
ggtatggctatgttactcctaatgatgtgcctgccttgctagaccaacacattgccaagg |
417019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 139
Target Start/End: Original strand, 405879 - 405937
Alignment:
| Q |
81 |
gtatggctatgttacttgtaatgatgtgcttaccttgctagaccaacacattgccaagg |
139 |
Q |
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| T |
405879 |
gtatggctatgttactcctaatgatgtgcctgccttgctggatcaacatattgccaagg |
405937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 149 - 259
Target Start/End: Original strand, 31321523 - 31321633
Alignment:
| Q |
149 |
gctacaaattgaattcaattgatatagaaaatatgaaagctggtttacaacaagcagtgaggattctaataacagaaggaacagttgaagtagaaacacg |
248 |
Q |
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|||||||||||||||||||||| | ||| ||||||| ||||||||||||||||| | | || ||||||||| ||| |||| |||||||||||| ||||| |
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| T |
31321523 |
gctacaaattgaattcaattgacagagagaatatgagagctggtttacaacaaggactaagaattctaatagcagcaggagcagttgaagtaggaacaca |
31321622 |
T |
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| Q |
249 |
cagaagtgatg |
259 |
Q |
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| T |
31321623 |
cagaagtgatg |
31321633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 31333776 - 31333883
Alignment:
| Q |
149 |
gctacaaattgaattcaattgatatagaaaatatgaaagctggtttacaacaagcagtgaggattctaataacagaaggaacagttgaagtagaaacacg |
248 |
Q |
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| T |
31333776 |
gctacaaattgaattcaatcgacaaagagaatatgagagccggtatacaacaagcactaagaattttaatagcagcaggagcagttgaagtaggaacaca |
31333875 |
T |
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| Q |
249 |
cagaagtg |
256 |
Q |
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| T |
31333876 |
cagaagtg |
31333883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 2148 - 2041
Alignment:
| Q |
149 |
gctacaaattgaattcaattgatatagaaaatatgaaagctggtttacaacaagcagtgaggattctaataacagaaggaacagttgaagtagaaacacg |
248 |
Q |
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||||||||||||||||||| || | ||| ||||||| ||| ||| ||||||||||| | || ||| ||||| ||| |||| |||||||||||| ||||| |
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| T |
2148 |
gctacaaattgaattcaatcgacaaagagaatatgagagccggtatacaacaagcactaagaattttaatagcagcaggagcagttgaagtaggaacaca |
2049 |
T |
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| Q |
249 |
cagaagtg |
256 |
Q |
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| T |
2048 |
cagaagtg |
2041 |
T |
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