View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7374_low_2 (Length: 716)

Name: NF7374_low_2
Description: NF7374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7374_low_2
NF7374_low_2
[»] chr1 (2 HSPs)
chr1 (17-696)||(29103920-29104587)
chr1 (17-682)||(29089673-29090326)


Alignment Details
Target: chr1 (Bit Score: 611; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 17 - 696
Target Start/End: Complemental strand, 29104587 - 29103920
Alignment:
Q  17 gaataagatggactgggaagttcttgagatgaaaatcaacagttggttagaagcggttaagatctcagtgaggacgctcttcgccggagagaggaacctc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29104587 gaataagatggactgggaagttcttgagatgaaaatcaacagttggttagaggcggttaagatctcagtgaggacgctcttcgccggagagaggaacctc 29104488  T
Q  117 tgcgatcgaatcttcgcttcgaattccatcaataattccatcaaagaagcttgttttgctgagatttctaagaatggagctattttgcttttcagatttc 216  Q
    ||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||    
T  29104487 tgcgatcgaatcttcgcttcgaattccatcaa------------agaagcttgttttgctgagatttctaaggatggagctattttacttttaagatttc 29104400  T
Q  217 ctgaagtcgttgcaaaaacaaagaaatcaaagccggagaagatttttcgattgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29104399 ctgaagtcgttgcaaaaacaaagaaatcaaagccggagaagatttttcgcttgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatc 29104300  T
Q  317 aattttctcgtttaattcaatagcagtcgttaaatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgag 416  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29104299 aattttctcgtttaattcaacagcagtcgttaaatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgag 29104200  T
Q  417 tctacaatattgaaggattcttccaaatcagcggcaaatttcggcggagttcattccctgacaaaggaaacaatgcagtatctcattactcttgcagatt 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29104199 tctacaatattgaaggattcttccaaatcagcggcaaatttcggcggagttcattccctgacagaggaaacaatgcagtatctcattactcttgcagatt 29104100  T
Q  517 acagcaacgtgctctctgagatattctttgacattcctcctctgtcgaagtcaccgttgccagaatcttacttatacagtccagaatcatcaaacaatac 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29104099 acagcaacgtgctctctgagatattctttgacattcctcctctgtcgaagtcaccgttgccagaatcttacttatacagtccagaatcatcaaacaatac 29104000  T
Q  617 tcctgaaatggagactggattttccgttcgaatagcgtggctgattctggttcttctttgtaaaattgatagcaaatcga 696  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29103999 tcctgaaatggagactggattttccgttcgaatagcgtggctgattctggttcttctttgtaaaattgatagcaaatcga 29103920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 682
Target Start/End: Complemental strand, 29090326 - 29089673
Alignment:
Q  17 gaataagatggactgggaagttcttgagatgaaaatcaacagttggttagaagcggttaagatctcagtgaggacgctcttcgccggagagaggaacctc 116  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||| || |||||  | |||||||| ||||||    
T  29090326 gaataagatggactgggaagttcttgagatgaaaatcaactgttggttagaggcagttaagatctcagtgagaacactcttttctggagagagaaacctc 29090227  T
Q  117 tgcgatcgaatcttcgcttcgaattccatcaataattccatcaaagaagcttgttttgctgagatttctaaga-atggagctattttgcttttcagattt 215  Q
    ||||| ||||| |||||||||||||||||||             |||||||||||||| ||| ||||| |||| ||||||||| | | || ||  |||||    
T  29090226 tgcgaacgaattttcgcttcgaattccatcag------------agaagcttgttttggtgaaatttc-aagagatggagctactcttctcttacgattt 29090140  T
Q  216 cctgaagtcgttgcaaaaacaaagaaatcaaagccggagaagatttttcgattgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaat 315  Q
    |||||| ||||||| |||||||||||||  |  |||||||||||||| || |||||||||||||| || ||||||||| ||||||| |||||| ||||||    
T  29090139 cctgaattcgttgcgaaaacaaagaaatggacaccggagaagattttccgtttgcttgatatgtatgccacaatcaccatgttgttaccggaggttgaat 29090040  T
Q  316 caattttctcgtttaattcaatagcagtcgttaaatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttga 415  Q
    | |||||||| || |||||||   | |  ||||||||||||||||||||||| |||||  || |  | || | |||| ||||| || | |  ||||| ||    
T  29090039 cgattttctctttcaattcaacctctggtgttaaatctcaagcatataattcacaacaaagactcgttgaatctgtaagaaatattttctcagaattcga 29089940  T
Q  416 gtctacaatattgaaggattcttccaaatcagcggcaaatttcggcggagttcattccctgacaaaggaaacaatgcagtatctcattactcttgcagat 515  Q
    |||  ||||  ||||||| |||||||||||   ||| |||||||||||  |||||||||| |||| | |||||||||| ||||| |  |  ||| |||||    
T  29089939 gtccgcaatcctgaaggactcttccaaatcgctggcgaatttcggcggtattcattcccttacaacgcaaacaatgcaatatcttaccaagcttacagat 29089840  T
Q  516 tacagcaacgtgctctctgagatattctttgacattcctcctctgtcgaagtcaccgttgccagaatcttacttatacagtccagaatcatcaaacaata 615  Q
    |||||||||||||| ||||| |||||||| |||||||||||   || ||| || || ||||||||||||||||||||||||||||||||||| ||| |      
T  29089839 tacagcaacgtgctttctgaaatattcttcgacattcctccgtcgttgaattccccattgccagaatcttacttatacagtccagaatcatccaactact 29089740  T
Q  616 ctcctgaaatggagactggattttccgttcgaatagcgtggctgattctggttcttctttgtaaaat 682  Q
    |  | ||||| || |||| ||||||| |||||||||||||| ||||||| |||||||| || |||||    
T  29089739 cgacggaaattgaaactgaattttccattcgaatagcgtggttgattctagttcttctctgcaaaat 29089673  T

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