View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7374_low_3 (Length: 601)
Name: NF7374_low_3
Description: NF7374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7374_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 148 - 586
Target Start/End: Complemental strand, 41985439 - 41985011
Alignment:
| Q |
148 |
taaatctccaattcaccccctaaatttgtacgggtctgacaattacacccttgaaatttgtgaaaaagcnnnnnnnnnn--cctatattgaatgaagtca |
245 |
Q |
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| T |
41985439 |
taaatctccaattcaccccctaaatttgtacgggtctgacaattacacccttgaaatttgtgaaaaagcaaaaaaaaaaaacctatattgaatgaagtaa |
41985340 |
T |
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| Q |
246 |
gacaacttggtccttctactaacttgtaaggacaagtttgacggtactatgtataattcaaggaataatttgctatcaagtgatat-ataattcaaggac |
344 |
Q |
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| T |
41985339 |
gacaacttggtccttctactaacttgtaaggactagtttgacggtacgatgtataattcaaggaagaatttgctatcaagtgatattataattcagggac |
41985240 |
T |
|
| Q |
345 |
taatatgctagtaagtaatataattcaaggacttatttgacagcaaaatagattcaagttagccgaatgatcaaggatcaagtcgatcgacataattcaa |
444 |
Q |
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| T |
41985239 |
taatatgctagtaagtaatataattcaaggacttatttgacagcaaaatagattcaagttagccgaatgatcaaggatcaagtcgatcgacataattcaa |
41985140 |
T |
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| Q |
445 |
aatgggaggagtcctttttgcctattcacaaagatatataaatgcccaacccctacaattttaggaggcgaattggcgattcactagcttaaaattatcg |
544 |
Q |
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| T |
41985139 |
aatgggaggagtcctttttgcctattcacaaagatgtataaatgcccaaaccctacaattttaggaggtgaattggcgattcac-------------tcg |
41985053 |
T |
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| Q |
545 |
aaaaatcatcgataagtataatcaatgtggccgcaattattg |
586 |
Q |
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| T |
41985052 |
aaaaatcatcgataagtataatcaatgcggccgcaattattg |
41985011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 28 - 151
Target Start/End: Complemental strand, 41985587 - 41985464
Alignment:
| Q |
28 |
cacatacaaagcataaactattacatctccagtcttcccaaaagagcactgtgaggtcataactcataataagaatttgaacagacagtgttttcctaat |
127 |
Q |
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| T |
41985587 |
cacatacagagcataaactattacatctccagtcttcccaaaagagcactgtgaggtcataactaataataagaatttgaacagacagtgttttcctaat |
41985488 |
T |
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| Q |
128 |
aaagagcaataattagaatctaaa |
151 |
Q |
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| T |
41985487 |
aaagagcaataattagaatctaaa |
41985464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 30575878 - 30575922
Alignment:
| Q |
233 |
ttgaatgaagtcagacaacttggtccttctactaacttgtaagga |
277 |
Q |
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| T |
30575878 |
ttgaatgacgtctgacaacttggtccttctgttaacttgtaagga |
30575922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 341 - 405
Target Start/End: Original strand, 41688502 - 41688566
Alignment:
| Q |
341 |
ggactaatatgctagtaagtaatataattcaaggacttatttgacagcaaaatagattcaagtta |
405 |
Q |
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| T |
41688502 |
ggactaatttgctagtaagtaatataatttgggggctaatttgacagtaaattagatacaagtta |
41688566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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