View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7374_low_4 (Length: 567)
Name: NF7374_low_4
Description: NF7374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7374_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 141 - 549
Target Start/End: Original strand, 52665170 - 52665599
Alignment:
| Q |
141 |
ttttggtgcctataaaaagaatctttcaccaatctcgacggctggtcaatttcagtcaattgaccttaattacaaaagattaatagcaatgggtgaaact |
240 |
Q |
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| T |
52665170 |
ttttggtgcctataaaaagaatctttcaccaacctcgacggctggtcaatctcagtcaattgaccttaattacaaaagattaatagcaatgggtgaaact |
52665269 |
T |
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| Q |
241 |
tggtgacaaaaacatccccttttccatgcccaaactgtgttaaggaggaaaagagtaaatatttggtttcaatcttccaaacaggaacatacctactacc |
340 |
Q |
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| T |
52665270 |
tggtgacaaaaacattcccttttccatgcccaaactgtgttcaggaggaaaagagtaaatatttggtttcaatcttccaaacaggaacatacctactacc |
52665369 |
T |
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| Q |
341 |
aaaggtctgtgggcactaggctgcacatggatttcaaaaccaaag---------------------taggctctttaattgttcctatttctactccttt |
419 |
Q |
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| T |
52665370 |
aaaggtctgtgggcactaggctgcacatggatttcaaaaccaaagtatttatagagttatgggcactaggctctttaattgttcctatttctactccttt |
52665469 |
T |
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| Q |
420 |
catttggttcatcttgggaaaattaagatttcaattgttcctatttgtaagccctataaactcatgtcatatttttgttacgtgtaagctctcaattcaa |
519 |
Q |
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| T |
52665470 |
catttggttcatcttgcgaaaattaagatttcaattgttcctatttgtaagccctataaactcatgtcatatttttgttacgtgtaagctctcaattcaa |
52665569 |
T |
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| Q |
520 |
atctggaaaaagcctgggctatgggatagt |
549 |
Q |
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| T |
52665570 |
atctggaaaaagcctgggctatgggatagt |
52665599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 52665057 - 52665125
Alignment:
| Q |
8 |
agattattctcaaccttggattctaaccgttctttaacctctttaacctaccaaagtcaagcattgatg |
76 |
Q |
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| T |
52665057 |
agattcttctcaaccttggattctaaccgttctttaacctctttaacctgccaaagtcaagcattgatg |
52665125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 33194240 - 33194277
Alignment:
| Q |
96 |
aaatgtaaggtacacaatttctatccacttaatacctc |
133 |
Q |
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| T |
33194240 |
aaatgcaaggtacacaatttctatccacttaatacctc |
33194277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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