View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7374_low_5 (Length: 466)
Name: NF7374_low_5
Description: NF7374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7374_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 12 - 419
Target Start/End: Complemental strand, 43984643 - 43984235
Alignment:
| Q |
12 |
tgttgagactatttaaaaataggatttatacaaaagcgaatttatttaaaagaggagtgttaaattatgttccaattctatgtggaaatggtgtggcatt |
111 |
Q |
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| T |
43984643 |
tgttgagactatttaaaaataggatttatacaaaagcgaatttatttaaaagaggagtgttaaattatgttccaattctatgtggaaatggtgtggcatt |
43984544 |
T |
|
| Q |
112 |
gattgaacatctaagtatcgtatagaattctaagttggttggaagtttctgatcattgggaaaactcaattgagttcatttggtaaaactctgttgcata |
211 |
Q |
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| T |
43984543 |
gattgaacatctaagtatcgtatagaattctaagttggttgcaagtttctgatcattgggaaaactcaattgagttcatttggtaaaactctgttgcata |
43984444 |
T |
|
| Q |
212 |
tattgtagcagtactatcatgcatgtgtatacttgtgtgctaatcaagtgtttggagctaattagcatgactcacaagtattgtaagttaagccatactt |
311 |
Q |
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| T |
43984443 |
tattgtaacagtactatcatgcatgtgtatacttgtgtgctaatcaagtgtttggagctaattagcatgactcacaagtattgtaagttaagccatactt |
43984344 |
T |
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| Q |
312 |
catagtttattatagctctcggtgc-nnnnnnnttactaattttggtcatttctttgctgctgcgggtggaattttagtgtgcactgatgtggaagttta |
410 |
Q |
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| T |
43984343 |
catagtttattatagctctcggtgcaaaaaaaattactaattttggtcatttctttgctgctgcgggtggaattttagtgtgcactgatgtggaagttta |
43984244 |
T |
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| Q |
411 |
ttggggttt |
419 |
Q |
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| T |
43984243 |
ttggggttt |
43984235 |
T |
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