View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7374_low_6 (Length: 455)
Name: NF7374_low_6
Description: NF7374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7374_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 12 - 437
Target Start/End: Complemental strand, 38821355 - 38820944
Alignment:
| Q |
12 |
tgttcataagttaatggaatatttgggtgttgttgagagggaggtgattaagtttatgattttctatggattggtgatgataatgttaaagcgcacaaag |
111 |
Q |
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| T |
38821355 |
tgttcataagttaatggaatatttgggtgttgttgagagggaggtgattaagtttatgattttctatggattggtgatgataatgttaaagcgcacaaag |
38821256 |
T |
|
| Q |
112 |
tgctgtgattctcttttgctataacatcatttttgttctataagtctaatttgctataacattgaaccttgactcaaacaattcaataagtctaatttcc |
211 |
Q |
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| T |
38821255 |
tgctgtgattctcttttgctataacatcatttttgttctataagtctaatttgctataacattgatccttgactcaaacaattcaataagtctaatttcc |
38821156 |
T |
|
| Q |
212 |
tatcacaattcaatcctccgctgtttcctcaaagctttttcaaccttgaatcagatttaaagaacatccaataccattaatggattaacagtttggaaca |
311 |
Q |
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| T |
38821155 |
tatcaaaattcaatcctc--------------agctttttcaaccttgaatcagatttaaagaacatccagtaccattaatggattaacagtttggaaca |
38821070 |
T |
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| Q |
312 |
aatgcaggttctatagatacaaactagaagttgaagatttgaagaatggtgttactggaataggacctgagaaattgttgtataagatattatgggaagt |
411 |
Q |
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| T |
38821069 |
aatgcaggttctatagatacaaactagaagttgaagattagaagaatggtgttactggaataggacctgagaaattgttgtataagatattctgggaagt |
38820970 |
T |
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| Q |
412 |
gagatgagactaatgaaagtaacaag |
437 |
Q |
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| T |
38820969 |
gagaagagactaatgaaagtaacaag |
38820944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 257 - 422
Target Start/End: Original strand, 38800611 - 38800776
Alignment:
| Q |
257 |
ttgaatcagatttaaagaacatccaataccattaatggattaacagtttggaacaaatgcaggttctatagatacaaactagaagttgaagatttgaaga |
356 |
Q |
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| T |
38800611 |
ttgaatcagatttaaataacatgtagcagcatcaatggagtgatagtttggcacaaatgtaggttttgaagatatgaactagaagttagacttttgaaga |
38800710 |
T |
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| Q |
357 |
atggtgttactggaataggacctgagaaattgttgtataagatattatgggaagtgagatgagact |
422 |
Q |
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| T |
38800711 |
atcgtgttactggaataggacctgataaattgttgtagaagatgttcagggaagtcacatgagact |
38800776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 38799980 - 38800060
Alignment:
| Q |
18 |
taagttaatggaatatttgggtgttgttgagagggaggtgattaagtttatgattttctatggattggtgatgataatgtta |
99 |
Q |
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| T |
38799980 |
taagttaatggaatatgtgggagttttttagagggagtaaatta-gtatatgattttctattggttggtgatgataatgtta |
38800060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 28754910 - 28754863
Alignment:
| Q |
43 |
gttgagagggaggtgattaagtttatgattttctatggattggtgatg |
90 |
Q |
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| T |
28754910 |
gttgagagggaggtgattaagtttatgattttctatggattggtgatg |
28754863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 28754863 - 28754798
Alignment:
| Q |
104 |
gcacaaagtgctgtgattctcttttgctataacatcatttttgttc-tataagtctaatttgctat |
168 |
Q |
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| T |
28754863 |
gcacaaagtgttgtgattctccttggctataccatcattttggttcctataagtgtaatttgctat |
28754798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 333 - 415
Target Start/End: Original strand, 44015105 - 44015187
Alignment:
| Q |
333 |
aactagaagttgaagatttgaagaatggtgttactggaataggacctgagaaattgttgtataagatattatgggaagtgaga |
415 |
Q |
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| T |
44015105 |
aactagaagttagagttttgaagaatggagttactggaataggacctgagaagttgttgtaggagatattgagtgaagtgaga |
44015187 |
T |
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