View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7374_low_8 (Length: 373)

Name: NF7374_low_8
Description: NF7374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7374_low_8
NF7374_low_8
[»] chr5 (3 HSPs)
chr5 (6-355)||(32267600-32267953)
chr5 (6-355)||(41901156-41901509)
chr5 (15-355)||(41889181-41889525)
[»] chr4 (12 HSPs)
chr4 (231-355)||(1600547-1600671)
chr4 (88-203)||(547193-547308)
chr4 (295-352)||(644961-645018)
chr4 (295-355)||(553607-553667)
chr4 (293-355)||(3438475-3438537)
chr4 (81-171)||(10634134-10634224)
chr4 (304-355)||(641043-641094)
chr4 (304-355)||(53761692-53761743)
chr4 (293-355)||(6006456-6006518)
chr4 (318-355)||(566317-566354)
chr4 (76-113)||(53761480-53761517)
chr4 (295-355)||(1524397-1524457)
[»] chr3 (3 HSPs)
chr3 (293-352)||(1657378-1657437)
chr3 (304-355)||(13470652-13470703)
chr3 (77-110)||(514421-514454)
[»] chr8 (4 HSPs)
chr8 (295-352)||(28246206-28246263)
chr8 (309-355)||(27922633-27922679)
chr8 (87-272)||(17627762-17627947)
chr8 (256-356)||(34936035-34936135)
[»] chr6 (9 HSPs)
chr6 (295-352)||(11936186-11936243)
chr6 (295-352)||(11948166-11948223)
chr6 (239-353)||(9411482-9411596)
chr6 (304-355)||(6402988-6403039)
chr6 (87-149)||(10579461-10579523)
chr6 (81-113)||(6602905-6602937)
chr6 (81-113)||(7119506-7119538)
chr6 (81-113)||(7131984-7132016)
chr6 (319-355)||(12097146-12097182)
[»] chr7 (2 HSPs)
chr7 (292-349)||(7977712-7977769)
chr7 (304-355)||(10614721-10614772)
[»] chr1 (1 HSPs)
chr1 (139-353)||(9586766-9586980)


Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 6 - 355
Target Start/End: Complemental strand, 32267953 - 32267600
Alignment:
Q  6 gtttcgtgttgatttggaatctataaatttgactcattgttcaatgctcacagaatcagccttctttgtact----aagaactgcccttcacttagtgag 101  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    ||||||||||||||||||||||||    
T  32267953 gtttcttgttgatttggaatctataaatttgactcattgttcaatgcttacagaatcagccttctttgttctccttaagaactgcccttcacttagtgag 32267854  T
Q  102 atcaaaatggaacacaaatgtatttggaaaaagagtctagagagttctaaatctttaatggattttgttgcttgccctcaattgaagtatcttcatttgg 201  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||    
T  32267853 atcaaaatggaacacacatgtattgggaaaaagagtctagagagttctaaatctttgatggattttgttgcttgccctcaattaaagtatcttcgtttgg 32267754  T
Q  202 ctcacaatccatagttatttgatgaatatatcataacgtttgcttccaccttctccaatttgcagctgctttacttgagcaattgttgtcgcatatctga 301  Q
    |||||||||||| | ||||||||||||||||||  | | ||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  32267753 ctcacaatccatggctatttgatgaatatatcaccatgcttgcttccatcttctccaatttgcagctgcttgatttgagcaattgttgtcgcatatctga 32267654  T
Q  302 ataaggtattgttcaagttttaaggatattttgtaacattagacatttgaactt 355  Q
    | ||||||| |||||| |||||||||||| ||||||||||||||||||||||||    
T  32267653 agaaggtatcgttcaatttttaaggatatgttgtaacattagacatttgaactt 32267600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 6 - 355
Target Start/End: Original strand, 41901156 - 41901509
Alignment:
Q  6 gtttcgtgttgatttggaatctataaatttgactcattgttcaatgctcacagaatcagccttctttgtact----aagaactgcccttcacttagtgag 101  Q
    ||||| || |||||||| ||||||||| ||| ||  |||  | ||| |||| | ||||||||||||||||||    | ||| || ||||||||| ||||     
T  41901156 gtttcttggtgatttggtatctataaacttggctagttgcccgatggtcacggtatcagccttctttgtacttcttaggaattgtccttcacttggtgat 41901255  T
Q  102 atcaaaatggaacacaaatgtatttggaaaaagagtctagagagttctaaatctttaatggattttgttgcttgccctcaattgaagtatcttcatttgg 201  Q
    ||||| |||||| ||| | ||||| ||||| |||||||||||||||||| |||||| ||| |||||||||| | ||||||||| ||||||||||  ||||    
T  41901256 atcaatatggaagacacaggtattgggaaagagagtctagagagttctagatctttgatgaattttgttgcataccctcaattaaagtatcttcgattgg 41901355  T
Q  202 ctcacaatccatagttatttgatgaatatatcataacgtttgcttccaccttctccaatttgcagctgctttacttgagcaattgttgtcgcatatctga 301  Q
    |||||||||| | ||||||||||||| | |||| || ||| |||||||  ||| ||||||||||||||||| | |||||||||||||||||||||| |||    
T  41901356 ctcacaatccgtggttatttgatgaagacatcacaatgttcgcttccattttccccaatttgcagctgcttgatttgagcaattgttgtcgcatatttga 41901455  T
Q  302 ataaggtattgttcaagttttaaggatattttgtaacattagacatttgaactt 355  Q
    | ||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  41901456 agaaggtattgttcaagttttaaggatgtgttgtaacattagacatttgaactt 41901509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 15 - 355
Target Start/End: Original strand, 41889181 - 41889525
Alignment:
Q  15 tgatttggaatctataaatttgactcattgttcaatgctcacagaatcagccttctttgtact----aagaactgcccttcacttagtgagatcaaaatg 110  Q
    |||||||| ||||||||| |||| ||||||||| || |||||||||||||| ||||||| |||    ||||| || ||||||||| |||  |||||||||    
T  41889181 tgatttggtatctataaacttgaatcattgttcgatactcacagaatcagcattctttgcacttcttaagaattgtccttcactttgtgttatcaaaatg 41889280  T
Q  111 gaacacaaatgtatttggaaaaagagtctagagagttctaaatctttaatggattttgttgcttgccctcaattgaagtatcttcatttggctcacaatc 210  Q
    |||||||  |||||| | ||| |||||||| |||| ||||||||||| |||||||||||||| | ||||||||| ||| |||||| ||||||||| ||||    
T  41889281 gaacacacgtgtattggaaaatagagtctaaagagctctaaatctttgatggattttgttgcataccctcaattaaagcatcttcgtttggctcaaaatc 41889380  T
Q  211 catagttatttgatgaatatatcataacgtttgcttccaccttctccaatttgcagctgctttacttgagcaattgttgtcgcatatctgaataaggtat 310  Q
    ||| |||||  |||||| | ||||||| |||||||||||  ||| | ||||||||||| ||| | |||||||||||||||||||||| |||  |||||||    
T  41889381 catggttatcagatgaagacatcataatgtttgcttccattttccctaatttgcagctacttgatttgagcaattgttgtcgcatatttgatgaaggtat 41889480  T
Q  311 tgttcaagttttaaggatattttgtaacattagacatttgaactt 355  Q
    |  ||||||||||||||||| ||||||||||||| ||||||||||    
T  41889481 tactcaagttttaaggatatgttgtaacattagatatttgaactt 41889525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 355
Target Start/End: Complemental strand, 1600671 - 1600547
Alignment:
Q  231 atcataacgtttgcttccaccttctccaatttgcagctgctttacttgagcaattgttgtcgcatatctgaataaggtattgttcaagttttaaggatat 330  Q
    ||||||| |||||||||||  ||  |||||||||| |||||| | ||||||| |||   |  |||||||||| ||||||||  |||||||||||||| ||    
T  1600671 atcataatgtttgcttccaattttcccaatttgcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagat 1600572  T
Q  331 tttgtaacattagacatttgaactt 355  Q
    ||| ||| |||||||||||||||||    
T  1600571 tttctaaaattagacatttgaactt 1600547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 547308 - 547193
Alignment:
Q  88 cttcacttagtgagatcaaaatggaacacaaatgtatttggaaaaagagtctagagagttctaaatctttaatggattttgttgcttgccctcaattgaa 187  Q
    ||||||||||||||||||||||||||| || |   ||| |||   ||||| |||||| |||||| ||||| | |||||||||||   |||||||||||||    
T  547308 cttcacttagtgagatcaaaatggaactcacaaaaattgggatggagagtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaa 547209  T
Q  188 gtatcttcatttggct 203  Q
    || ||| |||||||||    
T  547208 gtctctccatttggct 547193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 645018 - 644961
Alignment:
Q  295 tatctgaataaggtattgttcaagttttaaggatattttgtaacattagacatttgaa 352  Q
    |||||||| ||||||| ||||| ||||||| ||||| |||||||||||||||||||||    
T  645018 tatctgaagaaggtatggttcatgttttaatgatatgttgtaacattagacatttgaa 644961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 553667 - 553607
Alignment:
Q  295 tatctgaataaggtattgttcaagttttaaggatattttgtaacattagacatttgaactt 355  Q
    |||||||| ||| | ||||||| |||||||||| || ||||||||||||||||||||||||    
T  553667 tatctgaagaagctgttgttcatgttttaaggacatgttgtaacattagacatttgaactt 553607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 355
Target Start/End: Original strand, 3438475 - 3438537
Alignment:
Q  293 catatctgaataaggtattgttcaagttttaaggatattttgtaacattagacatttgaactt 355  Q
    |||||||||  ||||| || ||||||||||||||| || |||||| |||||||||||||||||    
T  3438475 catatctgacgaaggtgttattcaagttttaaggagatgttgtaagattagacatttgaactt 3438537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 10634134 - 10634224
Alignment:
Q  81 aactgcccttcacttagtgagatcaaaatggaacacaaatgtatttggaaaaagagtctagagagttctaaatctttaatggattttgttg 171  Q
    ||||| |||||||||||||||||||||||||||  ||  | |||| ||||||||| | | |||| |||||| ||||| | |||||||||||    
T  10634134 aactgtccttcacttagtgagatcaaaatggaatgcacgtctattgggaaaaagaatttcgagaattctaattctttgagggattttgttg 10634224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 355
Target Start/End: Complemental strand, 641094 - 641043
Alignment:
Q  304 aaggtattgttcaagttttaaggatattttgtaacattagacatttgaactt 355  Q
    |||| ||| |||||||||||||||||| ||||||  ||||||||||||||||    
T  641094 aaggaatttttcaagttttaaggatatgttgtaatgttagacatttgaactt 641043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 355
Target Start/End: Original strand, 53761692 - 53761743
Alignment:
Q  304 aaggtattgttcaagttttaaggatattttgtaacattagacatttgaactt 355  Q
    ||||||||  |||||||||||||| || |||||||||||| |||||||||||    
T  53761692 aaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaactt 53761743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 355
Target Start/End: Complemental strand, 6006518 - 6006456
Alignment:
Q  293 catatctgaataaggtattgttcaagttttaaggatattttgtaacattagacatttgaactt 355  Q
    |||||||||  ||||| ||| |||||||||||||| || | |||| |||||||||||||||||    
T  6006518 catatctgatgaaggtgttgctcaagttttaaggaaatgtagtaagattagacatttgaactt 6006456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 355
Target Start/End: Complemental strand, 566354 - 566317
Alignment:
Q  318 gttttaaggatattttgtaacattagacatttgaactt 355  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  566354 gttttaaggatatgttgtaacattacacatttgaactt 566317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 53761480 - 53761517
Alignment:
Q  76 ctaagaactgcccttcacttagtgagatcaaaatggaa 113  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  53761480 ctaaaaactgtccttcacttagtgagatcaaaatggaa 53761517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 1524397 - 1524457
Alignment:
Q  295 tatctgaataaggtattgttcaagttttaaggatattttgtaacattagacatttgaactt 355  Q
    |||||||| |||||||| |||| |||||||||| || ||||||  |||| |||||||||||    
T  1524397 tatctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaactt 1524457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 293 - 352
Target Start/End: Complemental strand, 1657437 - 1657378
Alignment:
Q  293 catatctgaataaggtattgttcaagttttaaggatattttgtaacattagacatttgaa 352  Q
    |||||||||| ||||||||||||| ||||||| ||||| |||||||||||||||||||||    
T  1657437 catatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaa 1657378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 355
Target Start/End: Original strand, 13470652 - 13470703
Alignment:
Q  304 aaggtattgttcaagttttaaggatattttgtaacattagacatttgaactt 355  Q
    ||||||||  ||||||||||||||||| |||||| ||||| |||||||||||    
T  13470652 aaggtatttgtcaagttttaaggatatgttgtaagattaggcatttgaactt 13470703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 514421 - 514454
Alignment:
Q  77 taagaactgcccttcacttagtgagatcaaaatg 110  Q
    ||||||||| ||||||||||||||||||||||||    
T  514421 taagaactgtccttcacttagtgagatcaaaatg 514454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 28246206 - 28246263
Alignment:
Q  295 tatctgaataaggtattgttcaagttttaaggatattttgtaacattagacatttgaa 352  Q
    |||||||| ||||||||||||| ||||||| ||||| |||||||||||||||||||||    
T  28246206 tatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaa 28246263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 27922679 - 27922633
Alignment:
Q  309 attgttcaagttttaaggatattttgtaacattagacatttgaactt 355  Q
    ||||||||||||||| ||||||  |||||||||||||||||||||||    
T  27922679 attgttcaagttttagggatatgctgtaacattagacatttgaactt 27922633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 272
Target Start/End: Original strand, 17627762 - 17627947
Alignment:
Q  87 ccttcacttagtgagatcaaaatggaacacaaatgtatttggaaaaagagtctagagagttctaaatctttaatggattttgttgcttgccctcaattga 186  Q
    |||||||||| |||||| |||||||||  || || |||| || || |||||||| ||| |||||| |||||  ||||||| ||||   |||||||||| |    
T  17627762 ccttcacttaatgagataaaaatggaatgcacatctattggggaagagagtctaaagaattctaattctttggtggatttcgttgtaagccctcaattaa 17627861  T
Q  187 agtatcttcatttggctcacaatccatagttatttgatgaatatatcataacgtttgcttccaccttctccaatttgcagctgctt 272  Q
    | | |||  ||||||||  |||| ||| | |||  |||||| | |||| || |||||||||||  ||| |||||||||| ||||||    
T  17627862 aatctctctatttggctttcaattcattgctatgcgatgaaaacatcaaaatgtttgcttccattttccccaatttgcaactgctt 17627947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 356
Target Start/End: Original strand, 34936035 - 34936135
Alignment:
Q  256 ccaatttgcagctgctttacttgagcaattgttgtcgcatatctgaataaggtattgttcaagttttaaggatattttgtaacattagacatttgaactt 355  Q
    |||||||||| |||||| | |||||| ||||  || |||||||| |  ||||||||  ||| |||||||||| || |||| |||||||||||||| ||||    
T  34936035 ccaatttgcatctgcttgatttgagcgattgcagtggcatatctaatcaaggtatttatcatgttttaaggagatgttgtgacattagacatttgtactt 34936134  T
Q  356 g 356  Q
    |    
T  34936135 g 34936135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 11936186 - 11936243
Alignment:
Q  295 tatctgaataaggtattgttcaagttttaaggatattttgtaacattagacatttgaa 352  Q
    |||||||| ||||||||||||| ||||||| ||||| |||||||||||||||||||||    
T  11936186 tatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaa 11936243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 11948166 - 11948223
Alignment:
Q  295 tatctgaataaggtattgttcaagttttaaggatattttgtaacattagacatttgaa 352  Q
    |||||||| ||||||||||||| ||||||| ||||| |||||||||||||||||||||    
T  11948166 tatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaa 11948223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 239 - 353
Target Start/End: Complemental strand, 9411596 - 9411482
Alignment:
Q  239 gtttgcttccaccttctccaatttgcagctgctttacttgagcaattgttgtcgcatatctgaataaggtattgttcaagttttaaggatattttgtaac 338  Q
    |||||||||||  ||| ||||||||||||||||| | ||||||   ||||||  ||||||| |  |||||||| | || |||||||||| || | |||||    
T  9411596 gtttgcttccattttccccaatttgcagctgcttgatttgagcggatgttgtaacatatctaacgaaggtattttgcaggttttaaggagatgtggtaac 9411497  T
Q  339 attagacatttgaac 353  Q
    |||||||||||||||    
T  9411496 attagacatttgaac 9411482  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 355
Target Start/End: Complemental strand, 6403039 - 6402988
Alignment:
Q  304 aaggtattgttcaagttttaaggatattttgtaacattagacatttgaactt 355  Q
    ||||||||  |||||||||||||| || |||||||||||| |||||||||||    
T  6403039 aaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaactt 6402988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 10579461 - 10579523
Alignment:
Q  87 ccttcacttagtgagatcaaaatggaacacaaatgtatttggaaaaagagtctagagagttct 149  Q
    ||||| ||||||||||||||||||||| ||| |  |||||||| ||||||| |||||| ||||    
T  10579461 ccttcgcttagtgagatcaaaatggaaaacacagctatttggacaaagagtgtagagaattct 10579523  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 6602905 - 6602937
Alignment:
Q  81 aactgcccttcacttagtgagatcaaaatggaa 113  Q
    ||||| |||||||||||||||||||||||||||    
T  6602905 aactgtccttcacttagtgagatcaaaatggaa 6602937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 7119538 - 7119506
Alignment:
Q  81 aactgcccttcacttagtgagatcaaaatggaa 113  Q
    ||||||||||||||||||||| |||||||||||    
T  7119538 aactgcccttcacttagtgagttcaaaatggaa 7119506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 7132016 - 7131984
Alignment:
Q  81 aactgcccttcacttagtgagatcaaaatggaa 113  Q
    ||||||||||||||||||||| |||||||||||    
T  7132016 aactgcccttcacttagtgagttcaaaatggaa 7131984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 355
Target Start/End: Complemental strand, 12097182 - 12097146
Alignment:
Q  319 ttttaaggatattttgtaacattagacatttgaactt 355  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  12097182 ttttaaggatatgttgtaacattacacatttgaactt 12097146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 7977769 - 7977712
Alignment:
Q  292 gcatatctgaataaggtattgttcaagttttaaggatattttgtaacattagacattt 349  Q
    |||| |||||| ||||||||| |||||||||||||| || ||||||||||||||||||    
T  7977769 gcatttctgaagaaggtattggtcaagttttaaggagatgttgtaacattagacattt 7977712  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 355
Target Start/End: Complemental strand, 10614772 - 10614721
Alignment:
Q  304 aaggtattgttcaagttttaaggatattttgtaacattagacatttgaactt 355  Q
    ||||||||  ||||||||||||||||| |||||| ||||| |||||||||||    
T  10614772 aaggtatttgtcaagttttaaggatatgttgtaagattaggcatttgaactt 10614721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 353
Target Start/End: Complemental strand, 9586980 - 9586766
Alignment:
Q  139 tagagagttctaaatctttaatggattttgttgcttgccctcaattgaagtatcttcatttggctcacaatccatagttatttgatgaatatatcataac 238  Q
    |||||| |||||||| ||| | |||| ||||||   | ||||||||||||| |||| |||||| || ||||| || ||||   ||| || | |||||||     
T  9586980 tagagaattctaaatttttgaaggatattgttgtaagacctcaattgaagtctcttgatttgggtcgcaatcaatggttaagagataaaaacatcataat 9586881  T
Q  239 gtttgcttccaccttctccaatttgcagctgctttacttgagcaattgttgtcgcatatctgaataaggtattgttcaagttttaaggatattttgtaac 338  Q
    ||||||||| |  ||| ||||||||||||||||| |  || || |||| |||  ||||||| ||  |||||||  ||||||||||   | || |||| |     
T  9586880 gtttgcttcaattttccccaatttgcagctgcttgatctgtgccattgctgtaacatatctaaaagaggtatttgtcaagttttacaaagatgttgtcag 9586781  T
Q  339 attagacatttgaac 353  Q
    |||||||||||||||    
T  9586780 attagacatttgaac 9586766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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