View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7374_low_9 (Length: 364)
Name: NF7374_low_9
Description: NF7374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7374_low_9 |
 | |
|
| [»] scaffold0201 (1 HSPs) |
| | |
|
| [»] scaffold0570 (2 HSPs) |
| | |
|
| [»] scaffold0022 (2 HSPs) |
| | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 19)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 23449443 - 23449111
Alignment:
| Q |
15 |
tgaggatactcgcagaaacttcaccagccatctttacgatgctttgagccgaaagaaagttaaaacatttatagacaacaatgagcttcgaaaaggagat |
114 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23449443 |
tgaggatactcgcagaaacttcactagccatctttatgatgctttgagccgaaagaaagttgaaacatttatagacaacaatgagcttcgaaaaggagat |
23449344 |
T |
|
| Q |
115 |
gagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23449343 |
gagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagc |
23449244 |
T |
|
| Q |
215 |
tcaaaaagattcttgaatgcaagaaatatatggaacagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcagactgggagtta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23449243 |
tcaaaaagattcttgaatgcaagaaatatatgcaacagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcagaccgggagtta |
23449144 |
T |
|
| Q |
315 |
cgagcaagcctttgaaaaacataagcgagattt |
347 |
Q |
| |
|
| |||||||||||| ||||||||||| |||||| |
|
|
| T |
23449143 |
caagcaagcctttgcaaaacataagcaagattt |
23449111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 23465576 - 23465244
Alignment:
| Q |
15 |
tgaggatactcgcagaaacttcaccagccatctttacgatgctttgagccgaaagaaagttaaaacatttatagacaacaatgagcttcgaaaaggagat |
114 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||| |||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
23465576 |
tgaggatactcgcagaaacttcactagccatctttacgacgctctgagccgaaagaaagttgaaacctttatagacaacaatgagcttcaaaaaggagat |
23465477 |
T |
|
| Q |
115 |
gagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23465476 |
gagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagc |
23465377 |
T |
|
| Q |
215 |
tcaaaaagattcttgaatgcaagaaatatatggaacagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcagactgggagtta |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23465376 |
tcaaaaagattcttgaatgcaagaaatatatggaacagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcagaccgggagtta |
23465277 |
T |
|
| Q |
315 |
cgagcaagcctttgaaaaacataagcgagattt |
347 |
Q |
| |
|
| |||||||||||| ||||||||||||| |||| |
|
|
| T |
23465276 |
caagcaagcctttgcaaaacataagcgaaattt |
23465244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 23501206 - 23500874
Alignment:
| Q |
15 |
tgaggatactcgcagaaacttcaccagccatctttacgatgctttgagccgaaagaaagttaaaacatttatagacaacaatgagcttcgaaaaggagat |
114 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||| |||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
23501206 |
tgaggatactcgcagaaacttcactagccatctttacgacgctctgagccgaaagaaagttgaaacctttatagacaacaatgagcttcaaaaaggagat |
23501107 |
T |
|
| Q |
115 |
gagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23501106 |
gagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcgtcaaaatggtgcttgaatgagc |
23501007 |
T |
|
| Q |
215 |
tcaaaaagattcttgaatgcaagaaatatatggaacagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcagactgggagtta |
314 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23501006 |
tcaaaaagattcttgaatgtaagaaatatatggagcagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcagaccgggagtta |
23500907 |
T |
|
| Q |
315 |
cgagcaagcctttgaaaaacataagcgagattt |
347 |
Q |
| |
|
| |||||||||||| |||||||||||||||||| |
|
|
| T |
23500906 |
caagcaagcctttgcaaaacataagcgagattt |
23500874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 16 - 347
Target Start/End: Complemental strand, 23354072 - 23353741
Alignment:
| Q |
16 |
gaggatactcgcagaaacttcaccagccatctttacgatgctttgagccgaaagaaagttaaaacatttatagacaacaatgagcttcgaaaaggagatg |
115 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| |||||| | |||||||||| |||| |||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
23354072 |
gaggatacccgcagaaacttcacgagccatctttatgatgctctaagccgaaagacagttgaaacctttatagacaacaatgagcttcaaaaaggagatg |
23353973 |
T |
|
| Q |
116 |
agatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23353972 |
agatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagct |
23353873 |
T |
|
| Q |
216 |
caaaaagattcttgaatgcaagaaatatatggaacagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcagactgggagttac |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23353872 |
caaaaagattcttgaatgcaagaaatatatgtaacagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcagaccgggagttac |
23353773 |
T |
|
| Q |
316 |
gagcaagcctttgaaaaacataagcgagattt |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
23353772 |
aagcaagcctttgaaaaacataagcgagattt |
23353741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 23406922 - 23406590
Alignment:
| Q |
15 |
tgaggatactcgcagaaacttcaccagccatctttacgatgctttgagccgaaagaaagttaaaacatttatagacaacaatgagcttcgaaaaggagat |
114 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| || ||| |||||||||||||| |||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
23406922 |
tgaggatactcgcagaaacttcactagccatctttatgacgctctgagccgaaagaaaattaaaatctttatagacaacaatgagcttcaaaaaggagat |
23406823 |
T |
|
| Q |
115 |
gagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23406822 |
gagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagc |
23406723 |
T |
|
| Q |
215 |
tcaaaaagattcttgaatgcaagaaatatatggaacagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcagactgggagtta |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
23406722 |
tcaaaaagattcttgaatgcaagaaatatatggaacagattgtgatacctgttttttacaacatagatccatcaaatgtgaggaagcagaccgggagtta |
23406623 |
T |
|
| Q |
315 |
cgagcaagcctttgaaaaacataagcgagattt |
347 |
Q |
| |
|
| |||||||||||| |||||||||||||||||| |
|
|
| T |
23406622 |
caagcaagcctttgcaaaacataagcgagattt |
23406590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 23480933 - 23480601
Alignment:
| Q |
15 |
tgaggatactcgcagaaacttcaccagccatctttacgatgctttgagccgaaagaaagttaaaacatttatagacaacaatgagcttcgaaaaggagat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||| ||||||||||||||| |||||| |||||||||| |
|
|
| T |
23480933 |
tgaggatactcgcagaaacttcaccagccatctttatgatgctctgagccgaaagaaagttgaaacctttatagacaacaataagcttcaaaaaggagat |
23480834 |
T |
|
| Q |
115 |
gagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagc |
214 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23480833 |
gagatctcgccagcactcatcaaagccattgagaagtcacatgcatctattgtcatcttctcagaaaactatgcttcttcaaaatggtgcttgaatgagc |
23480734 |
T |
|
| Q |
215 |
tcaaaaagattcttgaatgcaagaaatatatggaacagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcagactgggagtta |
314 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
23480733 |
tcaagaagattcttgaatgcaagaaatataaggaacacattgtgataccagttttttacaaaatagatccatcacatgtgaggaaccagaccgggagtta |
23480634 |
T |
|
| Q |
315 |
cgagcaagcctttgaaaaacataagcgagattt |
347 |
Q |
| |
|
||||||||| |||| |||||||||||||||||| |
|
|
| T |
23480633 |
cgagcaagcttttgcaaaacataagcgagattt |
23480601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 23474585 - 23474253
Alignment:
| Q |
15 |
tgaggatactcgcagaaacttcaccagccatctttacgatgctttgagccgaaagaaagttaaaacatttatagacaacaatgagcttcgaaaaggagat |
114 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||| |||||| ||||||||||||||||| |||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
23474585 |
tgaggatacccgcagaaacttcacatgccatctttatgatgctctgagccgaaagaaagttgaaacctttatagacaacaatgagcttcaaaaaggagat |
23474486 |
T |
|
| Q |
115 |
gagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagc |
214 |
Q |
| |
|
|||| ||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23474485 |
aagatatcgccagcactcatcagagccattgaggagtcacatgtgtctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagc |
23474386 |
T |
|
| Q |
215 |
tcaaaaagattcttgaatgcaagaaatatatggaacagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcagactgggagtta |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23474385 |
tcaaaaagattcttgaatgcaagaaatatatggtacagattgtgatacctgttttttacaacatagatccatcacatgtgaggaagcagactgggagtta |
23474286 |
T |
|
| Q |
315 |
cgagcaagcctttgaaaaacataagcgagattt |
347 |
Q |
| |
|
| |||||||||| | |||||||||||||||||| |
|
|
| T |
23474285 |
caagcaagccttcgcaaaacataagcgagattt |
23474253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 23442053 - 23441721
Alignment:
| Q |
15 |
tgaggatactcgcagaaacttcaccagccatctttacgatgctttgagccgaaagaaagttaaaacatttatagacaacaatgagcttcgaaaaggagat |
114 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||| |||||| |||||||||||||||| |||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
23442053 |
tgaggatacccgcagaaacttcacatgccatctttatgatgctcggagccgaaagaaagttgaaacctttatagacaacaatgagcttcaaaaaggagat |
23441954 |
T |
|
| Q |
115 |
gagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagc |
214 |
Q |
| |
|
|||| ||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23441953 |
aagatatcgccagcactcatcagagccattgaggagtcacatgtgtctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagc |
23441854 |
T |
|
| Q |
215 |
tcaaaaagattcttgaatgcaagaaatatatggaacagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcagactgggagtta |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23441853 |
tcaaaaagattcttgaatgcaagaaatatatggtacagattgtgatacctgttttttacaacatagatccatcacatgtgaggaagcagactgggagtta |
23441754 |
T |
|
| Q |
315 |
cgagcaagcctttgaaaaacataagcgagattt |
347 |
Q |
| |
|
| |||||||||| | |||||||||||||||||| |
|
|
| T |
23441753 |
caagcaagccttcgcaaaacataagcgagattt |
23441721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 23435641 - 23435312
Alignment:
| Q |
15 |
tgaggatactcgcagaaacttcaccagccatctttacgatgctttgagccgaaagaaagttaaaacatttatagacaacaatgagcttcgaaaaggagat |
114 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||| |||||| ||||||||||||||||| |||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
23435641 |
tgaggatacccgcagaaacttcacatgccatctttatgatgctctgagccgaaagaaagttgaaacctttatagacaacaatgagcttcaaaaaggagat |
23435542 |
T |
|
| Q |
115 |
gagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagc |
214 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
23435541 |
gagatctcgccagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcttcaaaatggtgcttaaatgagc |
23435442 |
T |
|
| Q |
215 |
tcaaaaagattcttgaatgcaagaaatatatggaacagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcagactgggagtta |
314 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
23435441 |
tcaaaaagattctagaatgcaagcaatatatggaattgaccgtgatacctgttttttacaacat---tccatcacatgtgaggaagcagaccgggagtta |
23435345 |
T |
|
| Q |
315 |
cgagcaagcctttgaaaaacataagcgagattt |
347 |
Q |
| |
|
| ||||||| |||| |||||||||||||||||| |
|
|
| T |
23435344 |
caagcaagcatttgcaaaacataagcgagattt |
23435312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 347
Target Start/End: Complemental strand, 23388558 - 23388230
Alignment:
| Q |
19 |
gatactcgcagaaacttcaccagccatctttacgatgctttgagccgaaagaaagttaaaacatttatagacaacaatgagcttcgaaaaggagatgaga |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||| || |||||||||| |||||| |||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23388558 |
gatactcgcagaaacttcacgagccatctttatgatactctgagccgaaaaaaagttgaaacctttatagacaacaatgagcttgaaaaaggagatgaga |
23388459 |
T |
|
| Q |
119 |
tctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaa |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| | || ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23388458 |
tctcaccagcactcatcaaagccattgaggagtcacacgtgtcaattatcatcttctcagaaaattatgcttcctcaaaatggtgcttgaatgagctcaa |
23388359 |
T |
|
| Q |
219 |
aaagattcttgaatgcaagaaatatatggaacagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcagactgggagttacgag |
318 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23388358 |
gaagattcttcaatgcaagaaatatatgcaacagattgtgatacctgttttttacaacatagatccctcacatgtgaggaagcagactgggagttacgag |
23388259 |
T |
|
| Q |
319 |
caagcctttgaaaaacataagcgagattt |
347 |
Q |
| |
|
|||||||| |||||||| ||||||||| |
|
|
| T |
23388258 |
caagccttcacaaaacatatgcgagattt |
23388230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 23456207 - 23455875
Alignment:
| Q |
15 |
tgaggatactcgcagaaacttcaccagccatctttacgatgctttgagccgaaagaaagttaaaacatttatagacaacaatgagcttcgaaaaggagat |
114 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| |||| || |||||||||||||| |||| |||||||||| |
|
|
| T |
23456207 |
tgaggatactcgcagaaacttcacaagccatctttatgatgctttgagtcgaaagaaagttgaaaccttcatagacaacaatgaccttcaaaaaggagat |
23456108 |
T |
|
| Q |
115 |
gagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagc |
214 |
Q |
| |
|
|||||||| || ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| | |
|
|
| T |
23456107 |
gagatctcaccaacactcatcaaaaccattgaggagtcacatgtgtctattgtcatcttctcagaaaactacgcttcctcaaaatggtgtttgaatgatc |
23456008 |
T |
|
| Q |
215 |
tcaaaaagattcttgaatgcaagaaatatatggaacagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcagactgggagtta |
314 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||| || |||||||| |
|
|
| T |
23456007 |
tcaaaaagattctagaatgcaagcaatatatggaacagatcgtgatacctattttttacaacattgatccatcacatgtgaggaagcaaaccgggagtta |
23455908 |
T |
|
| Q |
315 |
cgagcaagcctttgaaaaacataagcgagattt |
347 |
Q |
| |
|
| |||||||||||| ||||||||||| |||||| |
|
|
| T |
23455907 |
caagcaagcctttgcaaaacataagcaagattt |
23455875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 105 - 347
Target Start/End: Complemental strand, 21088658 - 21088416
Alignment:
| Q |
105 |
aaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgc |
204 |
Q |
| |
|
||||||||| ||||||||| ||||| ||||| |||| ||||||||||||| || ||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21088658 |
aaaaggagacgagatctcgccagcattcatcgaagctattgaggagtcacgtgtatctattgttatcttttcagaaaactatgcttcctcaaaatggtgc |
21088559 |
T |
|
| Q |
205 |
ttgaatgagctcaaaaagattcttgaatgcaagaaatatatggaacagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcaga |
304 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |||| ||| |||||||| |
|
|
| T |
21088558 |
ttgaatgagctcaaaaagattcaagaatgcaagaaatttatggaacagattgtgatacctgttttttacaaaatagatccattacatatgaagaagcaga |
21088459 |
T |
|
| Q |
305 |
ctgggagttacgagcaagcctttgaaaaacataagcgagattt |
347 |
Q |
| |
|
|| |||||||| || || |||||||||| |||| ||||||||| |
|
|
| T |
21088458 |
cttggagttacaagaaaacctttgaaaagcatatgcgagattt |
21088416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 15 - 263
Target Start/End: Complemental strand, 21087560 - 21087312
Alignment:
| Q |
15 |
tgaggatactcgcagaaacttcaccagccatctttacgatgctttgagccgaaagaaagttaaaacatttatagacaacaatgagcttcgaaaaggagat |
114 |
Q |
| |
|
|||||||||||||| |||| |||| ||||||||||| |||||| |||||| ||| || ||| |||| ||||||||||||||| ||||| |||||||||| |
|
|
| T |
21087560 |
tgaggatactcgcaaaaacatcacaagccatctttatgatgctctgagccaaaataatgttcaaacctttatagacaacaataagcttaaaaaaggagat |
21087461 |
T |
|
| Q |
115 |
gagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagc |
214 |
Q |
| |
|
||||| | ||| |||||||||||||||||| |||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21087460 |
aagatcacaccagaactcatcaaagccattgaagagtcacatgcatcgattgacatcttctcagaaaactacgcttcctcaaaatggtgcttgaatgagc |
21087361 |
T |
|
| Q |
215 |
tcaaaaagattcttgaatgcaagaaatatatggaacagattgtgatacc |
263 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||| ||||||||||| |
|
|
| T |
21087360 |
tcaaaaagattctagaatgcaagaaatataaggaacaaattgtgatacc |
21087312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 7 - 304
Target Start/End: Complemental strand, 36025645 - 36025351
Alignment:
| Q |
7 |
tttcgtgttgaggatactcgcagaaacttcaccagccatctttacgatgctttgagccgaaagaaagttaaaacatttatagacaacaatgagcttcgaa |
106 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| ||||||||||| || ||| ||||| |||||||||| |||||||||||| ||||||||||| || |
|
|
| T |
36025645 |
tttcgtggtgaggatactcgtagaaacttcacaagccatctttatgaagctctgagc---aagaaagttataacatttatagatgacaatgagcttgaaa |
36025549 |
T |
|
| Q |
107 |
aaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgctt |
206 |
Q |
| |
|
||||||| ||||||||| ||||||| |||||||| |||||| |||| ||||||||| |||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
36025548 |
aaggagacgagatctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgctt |
36025449 |
T |
|
| Q |
207 |
gaatgagctcaaaaagattcttgaatgcaagaaatatatggaacagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcaga |
304 |
Q |
| |
|
|||||| ||| |||||||| |||||||||||| ||| | ||||||||||||||| ||||| || | ||||||||||||||||||||||| |||| |
|
|
| T |
36025448 |
gaatgaactcgtcaagattctagaatgcaagaaagataatggacagattgtgatacctgttttctatgaaatagatccatcacatgtgaggaatcaga |
36025351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 15 - 336
Target Start/End: Complemental strand, 36004876 - 36004558
Alignment:
| Q |
15 |
tgaggatactcgcagaaacttcaccagccatctttacgatgctttgagccgaaagaaagttaaaacatttatagacaacaatgagcttcgaaaaggagat |
114 |
Q |
| |
|
|||||||||| | ||||| ||||| ||||||||||| || ||| ||||| |||||| ||| |||||||||||| ||||||||||| ||||||||| |
|
|
| T |
36004876 |
tgaggatactggtagaaagttcacaagccatctttatgaagctctgagc---aagaaaattataacatttatagatgacaatgagcttgaaaaaggagac |
36004780 |
T |
|
| Q |
115 |
gagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagc |
214 |
Q |
| |
|
||||||||| ||||||| |||||||| ||||| || || ||||||||| |||||||||||| || |||| |||||||||||||||||||||||||| | |
|
|
| T |
36004779 |
gagatctcgtcagcactgatcaaagctattgaagattcgtctgcatctatcgtcatcttctcaaaagactacgcttcctcaaaatggtgcttgaatgaac |
36004680 |
T |
|
| Q |
215 |
tcaaaaagattcttgaatgcaagaaatatatggaacagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcagactgggagtta |
314 |
Q |
| |
|
|| |||||||| ||||| |||||| || || ||||||||||||||| |||| ||| | ||||||||||||||||||||||| || | ||| ||||| |
|
|
| T |
36004679 |
tcgtcaagattctagaatgtaagaaagatcagggacagattgtgataccgattttctacgaaatagatccatcacatgtgaggaatcaaaatggaagtta |
36004580 |
T |
|
| Q |
315 |
cgagcaagcctttgaaaaacat |
336 |
Q |
| |
|
| ||||||||||| ||||||| |
|
|
| T |
36004579 |
tgggcaagcctttgcaaaacat |
36004558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 105 - 328
Target Start/End: Complemental strand, 36017452 - 36017229
Alignment:
| Q |
105 |
aaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgc |
204 |
Q |
| |
|
||||||||| |||||||| ||||||| ||||||||||||||||||||| |||||||||| ||||| ||||| || |||||||||| || ||||| ||| |
|
|
| T |
36017452 |
aaaaggagacgagatctcatcagcactgatcaaagccattgaggagtcagatgcatctatagtcatattctcgaaagactatgcttcttctaaatgatgc |
36017353 |
T |
|
| Q |
205 |
ttgaatgagctcaaaaagattcttgaatgcaagaaatatatggaacagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcaga |
304 |
Q |
| |
|
|||||||| ||| |||||||| |||||||||||| || || ||| ||||||||||| |||| ||| | ||||||||||||||||||||||| || | |
|
|
| T |
36017352 |
ttgaatgaactcgtcaagattctagaatgcaagaaagatcagggacaaattgtgataccgattttctacgaaatagatccatcacatgtgaggaatcaaa |
36017253 |
T |
|
| Q |
305 |
ctgggagttacgagcaagcctttg |
328 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
36017252 |
ttgggagttacaagcaagcctttg |
36017229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 79 - 340
Target Start/End: Complemental strand, 36034388 - 36034123
Alignment:
| Q |
79 |
acatttatagacaacaatgagcttcgaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatct----attgtcatcttc |
174 |
Q |
| |
|
|||||||||||| ||| |||||| ||||||||| |||||||| ||||||| ||||||||||||||||||||| |||||||| || |||| ||| |
|
|
| T |
36034388 |
acatttatagacgacagcgagcttgaaaaaggagacgagatctcatcagcactgatcaaagccattgaggagtcagatgcatctctatatattcatattc |
36034289 |
T |
|
| Q |
175 |
tcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatat-atggaacagattgtgataccagttttttac |
273 |
Q |
| |
|
||| || |||||||||| |||||||||| |||||||| ||| |||||||| |||||||||||| || |||| |||||||||||||| |||| ||| |
|
|
| T |
36034288 |
tcaaaagactatgcttcttcaaaatggtatttgaatgaactcgtcaagattctagaatgcaagaaagatcatggg-cagattgtgataccgattttctac |
36034190 |
T |
|
| Q |
274 |
aacatagatccatcacatgtgaggaagcagactgggagttacgagcaagcctttgaaaaacataagc |
340 |
Q |
| |
|
| ||||||||||||||||||||||| || | |||||||||| |||||||||||| ||| ||||||| |
|
|
| T |
36034189 |
gaaatagatccatcacatgtgaggaatcaaattgggagttacaagcaagcctttgcaaagcataagc |
36034123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 7 - 269
Target Start/End: Complemental strand, 36009932 - 36009673
Alignment:
| Q |
7 |
tttcgtgttgaggatactcgcagaaacttcaccagccatctttacgatgctttgagccgaaagaaagttaaaacatttatagacaacaatgagcttcgaa |
106 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||| ||||||| ||||||||| ||||| ||||| |||| || |||||| ||| || ||| ||| || |
|
|
| T |
36009932 |
tttcgtggtgagggcactcgtagaaacttcacaggccatctctacgatgctctgagc---aagaaggttataatatttatggacgacggtgatcttgaaa |
36009836 |
T |
|
| Q |
107 |
aaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgctt |
206 |
Q |
| |
|
||||||||||||| || || |||| ||||||||||||||||||||| | ||||||| |||||||| ||| || | |||||||| |||||||||||||| |
|
|
| T |
36009835 |
aaggagatgagatatcatcatcactaatcaaagccattgaggagtcatacacatctatagtcatcttttcaaaagattatgcttcttcaaaatggtgctt |
36009736 |
T |
|
| Q |
207 |
gaatgagctcaaaaagattcttgaatgcaagaaatatatggaacagattgtgataccagtttt |
269 |
Q |
| |
|
|||||| ||| || ||||| |||||||| ||| || ||| ||| ||||||||||| ||||| |
|
|
| T |
36009735 |
gaatgaactcgtcaaaattctagaatgcaaaaaagatttgggacaaattgtgatacctgtttt |
36009673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 296
Target Start/End: Original strand, 35766233 - 35766401
Alignment:
| Q |
128 |
cactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattct |
227 |
Q |
| |
|
||||||||| ||||||||| |||||||||| ||| ||||||| || ||||||||||||||||| || || ||||| ||| |||| | ||||| | |
|
|
| T |
35766233 |
cactcatcacagccattgaagagtcacatgtttctgttgtcatattttcagaaaactatgcttcatccaagtggtgtttggatgaaattgtgaagatcat |
35766332 |
T |
|
| Q |
228 |
tgaatgcaagaaatatatggaacagattgtgataccagttttttacaacatagatccatcacatgtgag |
296 |
Q |
| |
|
||||| |||||| || || ||| ||||||||||| || || || || |||||||||||||||||||| |
|
|
| T |
35766333 |
ggaatgtaagaaagatcggggacaaattgtgatacctgtgttctataaaatagatccatcacatgtgag |
35766401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 13750 - 13418
Alignment:
| Q |
15 |
tgaggatactcgcagaaacttcaccagccatctttacgatgctttgagccgaaagaaagttaaaacatttatagacaacaatgagcttcgaaaaggagat |
114 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| |||||| ||| |||||||||| || |||| ||||| |||||||||||||||| |||||||||| |
|
|
| T |
13750 |
tgaggatattcgcagaaacttcagaagccatctttatgatgctctgatccgaaagaaaattgaaacctttatggacaacaatgagcttcaaaaaggagat |
13651 |
T |
|
| Q |
115 |
gagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13650 |
gagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagc |
13551 |
T |
|
| Q |
215 |
tcaaaaagattcttgaatgcaagaaatatatggaacagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcagactgggagtta |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||| ||||| |
|
|
| T |
13550 |
tcaaaaagattcttgaatgcaagaaatatatggaacagattgtgatacctgttttttacaacatagatccagcaaatgtgaggaagcagactggaagtta |
13451 |
T |
|
| Q |
315 |
cgagcaagcctttgaaaaacataagcgagattt |
347 |
Q |
| |
|
| |||||||||||| |||||||||||||||||| |
|
|
| T |
13450 |
ccagcaagcctttgcaaaacataagcgagattt |
13418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 347
Target Start/End: Original strand, 9590 - 9922
Alignment:
| Q |
15 |
tgaggatactcgcagaaacttcaccagccatctttacgatgctttgagccgaaagaaagttaaaacatttatagacaacaatgagcttcgaaaaggagat |
114 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||| |||||| |||||||||||||| || |||| ||||| |||||||||||||||| |||||||||| |
|
|
| T |
9590 |
tgaggatactcgcagaaacttaacaagccatctttatgatgctctgagccgaaagaaaattgaaacctttatggacaacaatgagcttcaaaaaggagat |
9689 |
T |
|
| Q |
115 |
gagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9690 |
gagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtaatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagc |
9789 |
T |
|
| Q |
215 |
tcaaaaagattcttgaatgcaagaaatatatggaacagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcagactgggagtta |
314 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||| |||||||| || ||||||| ||||||||||| ||||| |
|
|
| T |
9790 |
tcaaaaagattcttgaatgcaagcaatatatggaacagatggtgatacctgttttttacaacttagatccagcaaatgtgagaaagcagactggaagtta |
9889 |
T |
|
| Q |
315 |
cgagcaagcctttgaaaaacataagcgagattt |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
9890 |
cgagcaagcctttgaaaaacataagcgagattt |
9922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 3153 - 3437
Alignment:
| Q |
17 |
aggatactcgcagaaacttcaccagccatctttacgatgctttgagccgaaagaaagttaaaacatttatagacaacaatgagcttcgaaaaggagatga |
116 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||| | | | |||||| || |||| || |||||||||| ||||||| |||| ||||||| |
|
|
| T |
3153 |
aggatactcgcagaaacctcacaagccatctttacgatgttccaaaatgcaagaaacttgaaaccttcatagacaaca-tgagcttaaaaaaagagatga |
3251 |
T |
|
| Q |
117 |
gatctcggcagc-actcatcaaagccattgaggagtcac----atgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatg |
211 |
Q |
| |
|
||||| |||| | ||||||||||||||||||||| |||||| || ||| ||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
3252 |
tatctcaccagccagccatcaaagccattgaggagtccgcatgatgcatttactgttatcttctcataaaactatgcttcctcaaaatgatgcttgaatg |
3351 |
T |
|
| Q |
212 |
agctcaaaaagattcttgaatgcaagaaatatatggaacagattgtgataccagttttttacaacatagatccatcacatgtgagg |
297 |
Q |
| |
|
|||||||||||||| | |||||| |||||||||||||||||||||| || | ||||||||| ||||||||||||| ||||||||| |
|
|
| T |
3352 |
agctcaaaaagattatagaatgctagaaatatatggaacagattgtaatgtctgttttttacgacatagatccatcgcatgtgagg |
3437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 15 - 335
Target Start/End: Original strand, 12894556 - 12894873
Alignment:
| Q |
15 |
tgaggatactcgcagaaacttcaccagccatctttacgatgctttgagccgaaagaaagttaaaacatttatagacaacaatgagcttcgaaaaggagat |
114 |
Q |
| |
|
|||||||||||| |||| |||||| || |||||||| |||||||||||| |||||||||| ||| |||||||| |||||||||||| |||||||||| |
|
|
| T |
12894556 |
tgaggatactcgtagaagcttcacaagtcatctttatgatgctttgagc---aagaaagttataacctttatagatgacaatgagcttcaaaaaggagat |
12894652 |
T |
|
| Q |
115 |
gagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagc |
214 |
Q |
| |
|
||||| || ||||| | ||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||| |||||||| | |
|
|
| T |
12894653 |
gagatatcctcagcattgatcaaagccattgaggagtcatatgcatctattgtcatcttctcaatagactatgcttcctcaaaatggtgtttgaatgaac |
12894752 |
T |
|
| Q |
215 |
tcaaaaagattcttgaatgcaagaaatat-atggaacagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcagactgggagtt |
313 |
Q |
| |
|
|| |||||||| |||||||||||| || |||| ||| ||||||||||| ||||||||| | ||||||||||||||||||||||| || || ||||| | |
|
|
| T |
12894753 |
tcgtcaagattctagaatgcaagaaagatcatgg-acaaattgtgatacctgttttttacgaaatagatccatcacatgtgaggaatcaaacagggaggt |
12894851 |
T |
|
| Q |
314 |
acgagcaagcctttgaaaaaca |
335 |
Q |
| |
|
|| |||||||||| |||||| |
|
|
| T |
12894852 |
acagtcaagcctttgcaaaaca |
12894873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 31159984 - 31159947
Alignment:
| Q |
170 |
tcttctcagaaaactatgcttcctcaaaatggtgcttg |
207 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
31159984 |
tcttctcaaaaaactatgcttcctcaacatggtgcttg |
31159947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 14639021 - 14638965
Alignment:
| Q |
159 |
atctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagct |
215 |
Q |
| |
|
||||||||| | ||||||||||||||||| ||||||| ||||||||| ||||||| |
|
|
| T |
14639021 |
atctattgttgttttctcagaaaactatgcatcctcaacatggtgcttagatgagct |
14638965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 87 - 222
Target Start/End: Original strand, 167552 - 167687
Alignment:
| Q |
87 |
agacaacaatgagcttcgaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactat |
186 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
167552 |
agacaacactgagcttcaaaaaggagatgagatctcgccaacactcatcaaagccattgaggagtaacatgcatctattgtcatcttctcagaaaactat |
167651 |
T |
|
| Q |
187 |
gcttcctcaaaatggtgcttgaatgagctcaaaaag |
222 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
167652 |
gcttcctcataatggtgcttgaatgagatcaaaaag |
167687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 167504 - 167539
Alignment:
| Q |
15 |
tgaggatactcgcagaaacttcaccagccatcttta |
50 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
|
|
| T |
167504 |
tgaggatactcgcagaaacttcacaagccatcttta |
167539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 73 - 328
Target Start/End: Complemental strand, 16124998 - 16124743
Alignment:
| Q |
73 |
gttaaaacatttatagacaacaatgagcttcgaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatct |
172 |
Q |
| |
|
||||| |||||||||||| ||| |||||| |||||||||||||||||| ||||||| |||||||||||||| |||||| ||||||||| ||||||| |
|
|
| T |
16124998 |
gttaagacatttatagacgacagcgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatct |
16124899 |
T |
|
| Q |
173 |
tctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatggaacagattgtgataccagtttttta |
272 |
Q |
| |
|
| |||||| |||||||||| ||||||||||| |||||||| ||| |||||||| |||||||||||| ||| | ||| |||||||||||| |||| || |
|
|
| T |
16124898 |
tttcagaagactatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattttcta |
16124799 |
T |
|
| Q |
273 |
caacatagatccatcacatgtgaggaagcagactgggagttacgagcaagcctttg |
328 |
Q |
| |
|
| ||||||||||| |||||||| || |||| ||||||||||| ||||||||||| |
|
|
| T |
16124798 |
tgaaatagatccatctcatgtgagaaatcagattgggagttacgggcaagcctttg |
16124743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 74 - 328
Target Start/End: Original strand, 16334654 - 16334908
Alignment:
| Q |
74 |
ttaaaacatttatagacaacaatgagcttcgaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatctt |
173 |
Q |
| |
|
|||| ||||||||||| |||| |||||| |||||||||||||||||| ||||||| |||||||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
16334654 |
ttaagacatttatagatgacaacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatctt |
16334753 |
T |
|
| Q |
174 |
ctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatggaacagattgtgataccagttttttac |
273 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||| ||| |||||||| |||||||||||| ||| | ||| |||||||||||| |||| || |
|
|
| T |
16334754 |
atcagaaaactatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattttctat |
16334853 |
T |
|
| Q |
274 |
aacatagatccatcacatgtgaggaagcagactgggagttacgagcaagcctttg |
328 |
Q |
| |
|
| ||||||||||| |||||||| | |||| |||||| |||| ||||||||||| |
|
|
| T |
16334854 |
gaaatagatccatctcatgtgagatatcagattgggagctacgggcaagcctttg |
16334908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 73 - 296
Target Start/End: Complemental strand, 16127151 - 16126928
Alignment:
| Q |
73 |
gttaaaacatttatagacaacaatgagcttcgaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatct |
172 |
Q |
| |
|
||||| |||||||||||| ||| |||||| |||||||||||||||||| ||||||| |||||||||||||| |||||| ||||||||| ||||||| |
|
|
| T |
16127151 |
gttaagacatttatagacgacagcgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatct |
16127052 |
T |
|
| Q |
173 |
tctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatggaacagattgtgataccagtttttta |
272 |
Q |
| |
|
| |||||| |||||||||| ||||||||||| |||||||| ||| |||||||| |||||||||||| ||| | ||| |||||||||||| |||| || |
|
|
| T |
16127051 |
tttcagaagactatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattttcta |
16126952 |
T |
|
| Q |
273 |
caacatagatccatcacatgtgag |
296 |
Q |
| |
|
| ||||||||||| |||||||| |
|
|
| T |
16126951 |
tgaaatagatccatctcatgtgag |
16126928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 6097933 - 6097893
Alignment:
| Q |
172 |
ttctcagaaaactatgcttcctcaaaatggtgcttgaatga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
6097933 |
ttctcagaaaactatgcttcctcaaaatggtgtttggatga |
6097893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 11125567 - 11125512
Alignment:
| Q |
180 |
aaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgca |
235 |
Q |
| |
|
||||||||||||||||| |||||| ||| ||||||| ||||||||| |||| |||| |
|
|
| T |
11125567 |
aaactatgcttcctcaacatggtgtttggatgagctaaaaaagattgttgagtgca |
11125512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 178271 - 178327
Alignment:
| Q |
159 |
atctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagct |
215 |
Q |
| |
|
||||||||| | ||||||||||||||||| ||||||| ||||||||| ||||||| |
|
|
| T |
178271 |
atctattgttgttttctcagaaaactatgcatcctcaacatggtgcttagatgagct |
178327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University