View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7375_high_6 (Length: 328)
Name: NF7375_high_6
Description: NF7375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7375_high_6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 25741299 - 25740973
Alignment:
| Q |
1 |
cccagacggggtagactaacagaagaattatgccaacggaatttgatacgccatttgctttagtgaaggagtttctgaaaccaccagatgcacgaatatg |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25741299 |
cccagacggggtagactaatagaagaattatgccaacggaatttgatacgccatttgctttagtgaaggagtttctgaaaccaccagatgcacgaatatg |
25741200 |
T |
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| Q |
101 |
ctcttgtagcaaataacatgcaatgacaaggcacacgattattccaactaggtcgtttctaaaggtgcttgcaactagatcaggagatacaacgatcaaa |
200 |
Q |
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| T |
25741199 |
ctcttgtagcaaataacatgcaatgacaaggcacacgattattccaactaggtcgtttctaaaggtgcttgcaactagatcaggagatacaacaatcaag |
25741100 |
T |
|
| Q |
201 |
agtaccaaagcacccggcaactccaaccaatctgcagaaacaatcagaaagagtaattatgtatattcaatatttcctcgtgcgnnnnnnnnataaagga |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25741099 |
agtatcaaagcacccggcaactccaaccaatctgcagaaacaatcagaaagagtaattatgtatattcaatatttcctcgtgcg-tttttttataaagga |
25741001 |
T |
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| Q |
301 |
cgaactgaaccaacaatggatgaatctt |
328 |
Q |
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| T |
25741000 |
cgaactgaaccaacaacggatgaatctt |
25740973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 25744833 - 25744588
Alignment:
| Q |
1 |
cccagacggggtagactaacagaagaattatgccaacggaatttgatacgccatttgctttagtgaaggagtttctgaaaccaccagatgcacgaatatg |
100 |
Q |
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| T |
25744833 |
cccagatggggtagactaacagaagaattatgccaatggaatttgatacgccatttgctctagtgaaggagtttctgaaaccaccagatgcacgaatatg |
25744734 |
T |
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| Q |
101 |
ctcttgtagcaaataacatgcaatgacaaggcacacgattattccaactaggtcgtttctaaaggtgcttgcaactagatcaggagatacaacgatcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25744733 |
ctcttgtagcaaataacatgcaatgacaaggcacacaattactccaacaaggtcgtttctaaaggtgcttgcaactagatcaggagatacaacaatcaaa |
25744634 |
T |
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| Q |
201 |
agtaccaaagcacccggcaactccaaccaatctgcagaaacaatca |
246 |
Q |
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| T |
25744633 |
agtatcaaagcacccggcaactccaaccaatctgcagaaacaatca |
25744588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 12514819 - 12514651
Alignment:
| Q |
18 |
aacagaagaattatgccaacggaatttgatacgccatttgctttagtgaaggagtttctgaaaccaccagatgcacgaatatgctcttgtagcaaataac |
117 |
Q |
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||||||||||||||||||| | |||||||| |||| ||||| || || || | ||| |||||||||||||| ||||| || |||||||||||||||| |
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| T |
12514819 |
aacagaagaattatgccaattgtatttgatattccatgagcttttgttaaagaatctctaaaaccaccagatgcccgaatttgttcttgtagcaaataac |
12514720 |
T |
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| Q |
118 |
atgcaatgacaaggcacacgattattccaactaggtcgtttctaaaggtgcttgcaactagatcaggag |
186 |
Q |
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| T |
12514719 |
atgcaatgacaaggcatactaccaagccaacttcatcgcttctaaaggtgtttgcaaatagatcgggag |
12514651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 133
Target Start/End: Complemental strand, 12510956 - 12510825
Alignment:
| Q |
2 |
ccagacggggtagactaacagaagaattatgccaacggaatttgatacgccatttgctttagtgaaggagtttctgaaaccaccagatgcacgaatatgc |
101 |
Q |
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||||| |||||||| || ||||||||||||||||| | |||||| | ||||| ||||| ||||| || | ||| || ||||| ||||| |||||||| |
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| T |
12510956 |
ccagatggggtagattagcagaagaattatgccaattgtatttgacatgccataagcttttgtgaatgaatctctaaagccaccggatgcccgaatatgt |
12510857 |
T |
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| Q |
102 |
tcttgtagcaaataacatgcaatgacaaggca |
133 |
Q |
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||||| ||||||||||||||||||| |||||| |
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| T |
12510856 |
tcttgcagcaaataacatgcaatgataaggca |
12510825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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