View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7375_low_1 (Length: 527)
Name: NF7375_low_1
Description: NF7375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7375_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 62 - 513
Target Start/End: Original strand, 14144239 - 14144703
Alignment:
| Q |
62 |
tgttttttctgcttcttcgtcggataaagcattgaaggaacgtcgttatttttaccttgaataagatatccgctaacaagatcaagttccttttgaagtt |
161 |
Q |
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|||||||| |||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14144239 |
tgttttttatgcttcttcgtcagataaggcgttgaaggaacgtcgttatttttaccttgaataagatattcgctaacaagatcaagttccttttgaagtt |
14144338 |
T |
|
| Q |
162 |
gctgacaaataggagcttaaacatgaacttgtgtgctaacatttgggatattttcagcgggcgaactcaaggatgaattcaaaggtgcggctgcatcttg |
261 |
Q |
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|| |||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
14144339 |
gcggacaaatacgagctttaacatgaacttgtgcgctaacatttgggatattttcagcgggcgaactcaagaatgaatccaaaggtgcggctgcatcttg |
14144438 |
T |
|
| Q |
262 |
ttccttcaggaat-------------gagcttctgtagcaactggtgcggtattcgttactgcatataacccatttccctttcaatctgaatccattttc |
348 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14144439 |
ttccttctggaatgtcgggcatgaatgagcttctgtagcaactggtgcggtatttgtcactgcatataacccatttccctttcaatctgaatccattttc |
14144538 |
T |
|
| Q |
349 |
aaacttcaactcaacactatgttcaagttcaattcatggcatcataggtgaaccctaatctatcatctcaaaggcttcattaccccacaaacatcacaat |
448 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14144539 |
aaacttcaactcaacactatgttcaacttcaattcatggcgtcatagaagaactctaatctatcatctcaaaggcttcattaccccacaaacatcacaat |
14144638 |
T |
|
| Q |
449 |
ccctaaaccctagccctcttttccaccatttctgcaccaacacttcagattcaacctcttctgca |
513 |
Q |
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| T |
14144639 |
ccctaaaccctagccctcttttccaccatttctgcaccaacccttcagattcaacctcttttgca |
14144703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 344 - 507
Target Start/End: Original strand, 14152513 - 14152679
Alignment:
| Q |
344 |
ttttcaaacttcaactcaacactatgttcaagttc---aattcatggcatcataggtgaaccctaatctatcatctcaaaggcttcattaccccacaaac |
440 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||| || || ||||||||||| || ||||||| || |||| |||||| | ||| |
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| T |
14152513 |
ttttcaaacttcaactcaacactatgttcaagttcttcaattcatggcgccacagaagaaccctaatcaattatctcaagggattcactacccctctaac |
14152612 |
T |
|
| Q |
441 |
atcacaatccctaaaccctagccctcttttccaccatttctgcaccaacacttcagattcaacctct |
507 |
Q |
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| T |
14152613 |
atcacaatccctaaaccctaaccctcttttccaccatttctgcaccaacacttcagattcaacctct |
14152679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 506
Target Start/End: Original strand, 14501934 - 14501965
Alignment:
| Q |
475 |
catttctgcaccaacacttcagattcaacctc |
506 |
Q |
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| T |
14501934 |
catttctgcaccaacacttcagattcaacctc |
14501965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 508
Target Start/End: Complemental strand, 14476439 - 14476405
Alignment:
| Q |
474 |
ccatttctgcaccaacacttcagattcaacctctt |
508 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
14476439 |
ccatttttgcaccaacacttcagattcaacctctt |
14476405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 6071327 - 6071381
Alignment:
| Q |
109 |
atttttaccttgaataagatatccgctaacaagatcaagttccttttgaagttgc |
163 |
Q |
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|||||||||||||||||||||| ||||||||||| ||||||||| ||||||||| |
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| T |
6071327 |
atttttaccttgaataagatatttgctaacaagattaagttccttctgaagttgc |
6071381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 162
Target Start/End: Original strand, 35066222 - 35066322
Alignment:
| Q |
62 |
tgttttttctgcttcttcgtcggataaagcattgaaggaacgtcgttatttttaccttgaataagatatccgctaacaagatcaagttccttttgaagtt |
161 |
Q |
| |
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||||| || |||||||||||||||||| || | |||| ||||| || ||||||||||| ||||||| | ||||||||||||||||| ||| |||||| |
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| T |
35066222 |
tgtttcttttgcttcttcgtcggataaggcgtaaaagggacgtcaacatctttaccttgaagaagatattctctaacaagatcaagttcttttggaagtt |
35066321 |
T |
|
| Q |
162 |
g |
162 |
Q |
| |
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| |
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|
| T |
35066322 |
g |
35066322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 38233374 - 38233326
Alignment:
| Q |
115 |
accttgaataagatatccgctaacaagatcaagttccttttgaagttgc |
163 |
Q |
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| T |
38233374 |
acctttaataagacattctctaacaagatcaagttccttttgaagttgc |
38233326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 3686189 - 3686139
Alignment:
| Q |
121 |
aataagatatccgctaacaagatcaagttccttttgaagttgctgacaaat |
171 |
Q |
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|||||||||| || | ||||||||||||||||| ||||||||| ||||||| |
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| T |
3686189 |
aataagatattcgtttacaagatcaagttccttctgaagttgcagacaaat |
3686139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 7705427 - 7705377
Alignment:
| Q |
113 |
ttaccttgaataagatatccgctaacaagatcaagttccttttgaagttgc |
163 |
Q |
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|||||||||||| ||||| | ||||| |||||||||||||| ||||||||| |
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| T |
7705427 |
ttaccttgaataggatattctctaactagatcaagttccttctgaagttgc |
7705377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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