View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7375_low_2 (Length: 500)
Name: NF7375_low_2
Description: NF7375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7375_low_2 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 484
Target Start/End: Complemental strand, 1024 - 558
Alignment:
| Q |
18 |
aaatattttattccaaatcaacaaatgatcatgtaacaaaattactactacactaaatgaaaataaacaacacaacagtaacgtctcataaatagtaaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1024 |
aaatattttattccaaatcaacaaatgatcatgtaacaaaattactaccacactaaatgaaaataaacaaca-----gtaacgtctcataaatagtaaat |
930 |
T |
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| Q |
118 |
atttgacattaacaaggttaata----------gtaactaactgtacacatgacacagttgttattagggtatagttgttgttagtaacaatattcagaa |
207 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
929 |
atttgacat-aacaaggttaataaagaatggcagtaactaactgtacacatgacacagt----attagggtatagttgttgttggtaacaatattcagaa |
835 |
T |
|
| Q |
208 |
ggtcatatgaaatgtccatgagacacagacaagcatggaaggtgaatgaagtaaaggagtaatgatttttataacttccatgatttgactgtcacaaaca |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
834 |
ggtcatatgaaatgtccatgagacacagacaagcatggaaggtgaatgaagtaaaggagtaatgatttttataacttccatgatttgactgtcaccaaca |
735 |
T |
|
| Q |
308 |
cttcttttttaccgtaacttccctcttcttgcgcttttcccgtgccttccttccttccaaactgtaatcaaatcattactactgtaccaattttattttc |
407 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
734 |
cttcttttttaccgtaacttcccccttcttgcgcttttcccgtgccttccttccttccaaaccgtaatcaaatcattactactgtaccaattttattttc |
635 |
T |
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| Q |
408 |
catcaaataaattaaatacaaaaatcaaaaaccttagaaaggaatatgttccccctggttaatgttcagcaaatcga |
484 |
Q |
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| T |
634 |
cataaaataaattaaatacaaaaatcaaaaaccttagaaaggaatatgttccccccggttaatgttcagcaaatcga |
558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 484
Target Start/End: Original strand, 42903862 - 42904328
Alignment:
| Q |
18 |
aaatattttattccaaatcaacaaatgatcatgtaacaaaattactactacactaaatgaaaataaacaacacaacagtaacgtctcataaatagtaaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42903862 |
aaatattttattccaaatcaacaaatgatcatgtaacaaaattactaccacactaaatgaaaataaacaaca-----gtaacgtctcataaatagtaaat |
42903956 |
T |
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| Q |
118 |
atttgacattaacaaggttaata----------gtaactaactgtacacatgacacagttgttattagggtatagttgttgttagtaacaatattcagaa |
207 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
42903957 |
atttgacat-aacaaggttaataaagaatggcagtaactaactgtacacatgacacagt----attagggtatagttgttgttggtaacaatattcagaa |
42904051 |
T |
|
| Q |
208 |
ggtcatatgaaatgtccatgagacacagacaagcatggaaggtgaatgaagtaaaggagtaatgatttttataacttccatgatttgactgtcacaaaca |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42904052 |
ggtcatatgaaatgtccatgagacacagacaagcatggaaggtgaatgaagtaaaggagtaatgatttttataacttccatgatttgactgtcaccaaca |
42904151 |
T |
|
| Q |
308 |
cttcttttttaccgtaacttccctcttcttgcgcttttcccgtgccttccttccttccaaactgtaatcaaatcattactactgtaccaattttattttc |
407 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42904152 |
cttcttttttaccgtaacttcccccttcttgcgcttttcccgtgccttccttccttccaaaccgtaatcaaatcattactactgtaccaattttattttc |
42904251 |
T |
|
| Q |
408 |
catcaaataaattaaatacaaaaatcaaaaaccttagaaaggaatatgttccccctggttaatgttcagcaaatcga |
484 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42904252 |
cataaaataaattaaatacaaaaatcaaaaaccttagaaaggaatatgttccccccggttaatgttcagcaaatcga |
42904328 |
T |
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