View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7375_low_4 (Length: 438)

Name: NF7375_low_4
Description: NF7375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7375_low_4
NF7375_low_4
[»] chr2 (1 HSPs)
chr2 (20-428)||(45366672-45367080)
[»] chr7 (3 HSPs)
chr7 (93-234)||(23422575-23422719)
chr7 (106-153)||(619605-619652)
chr7 (97-125)||(26881707-26881735)
[»] chr6 (1 HSPs)
chr6 (96-153)||(9685130-9685187)
[»] scaffold0229 (1 HSPs)
scaffold0229 (93-153)||(7473-7533)
[»] chr1 (1 HSPs)
chr1 (93-153)||(1281465-1281525)
[»] chr5 (3 HSPs)
chr5 (98-153)||(19726768-19726823)
chr5 (97-198)||(26387936-26388037)
chr5 (98-150)||(15596367-15596419)
[»] chr3 (2 HSPs)
chr3 (120-223)||(26023606-26023712)
chr3 (99-153)||(26023705-26023760)
[»] chr4 (1 HSPs)
chr4 (165-245)||(19266573-19266653)


Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 20 - 428
Target Start/End: Original strand, 45366672 - 45367080
Alignment:
Q  20 accataaatagaattttatttccaaccaccatcatgattagaaggaatcggtatacgaaataaaatttatcacaaggatttaatttgtatacactgacga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45366672 accataaatagaattttatttccaaccaccatcatgattagaaggaatcggtatacgaaataaaatttatcacaaggatttaatttgtatacactgacga 45366771  T
Q  120 tgtaaaactttttcaaacatgcatccaatcaaatgagtcatgtaaatttgtggagatattttatgaactaacctataaaagcggcactacggtgtaattt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  45366772 tgtaaaactttttcaaacatgcatccaatcaaatgagtcatgtaaatttgtggagatattttatgaactaacctataaaagcggcactatggtgtaattt 45366871  T
Q  220 gatttgacacatgtgtaagaaagtttcaccgtcaatgcatagaaatgaatttctttatcacagatggattgtcgtaacagcacaaccagcaccaaatgtt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45366872 gatttgacacatgtgtaagaaagtttcaccgtcaatgcatagaaatgaatttctttatcacagatggattgtcgtaacagcacaaccagcaccaaatgtt 45366971  T
Q  320 gttaacagttatcacgacagtattnnnnnnngagaagcaaattctaactactgtaaaactaaattttaagattaagtgattccttgtgaaagtgtgaata 419  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45366972 gttaacagttatcacgacagtattaaaaaaagagaagcaaattctaactactgtaaaactaaattttaagattaagtgattccttgtgaaagtgtgaata 45367071  T
Q  420 gcagtatta 428  Q
    ||| |||||    
T  45367072 gcaatatta 45367080  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 234
Target Start/End: Original strand, 23422575 - 23422719
Alignment:
Q  93 aaggatttaatttgtatacactgacgatgtaaaactttttcaaacatgcatccaatcaaatga-gtcatgta--aatttgtggagatattttatgaacta 189  Q
    ||||||||||||||||||| | |||  ||||||||||||||| ||||||| ||| |||||| | ||||||||   |||||||| ||||||||| || |||    
T  23422575 aaggatttaatttgtatacgccgacagtgtaaaactttttcacacatgcagccattcaaatcatgtcatgtaggtatttgtggggatattttaggagcta 23422674  T
Q  190 acctataaaagcggcactacggtgtaatttgatttgacacatgtg 234  Q
    || |||||||| | ||||  ||||| | |||||| ||| ||||||    
T  23422675 acatataaaagtgacactttggtgtgacttgattagacgcatgtg 23422719  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 153
Target Start/End: Complemental strand, 619652 - 619605
Alignment:
Q  106 gtatacactgacgatgtaaaactttttcaaacatgcatccaatcaaat 153  Q
    ||||||||||||  ||||||||||||||| |||||||| |||||||||    
T  619652 gtatacactgacactgtaaaactttttcacacatgcattcaatcaaat 619605  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 125
Target Start/End: Complemental strand, 26881735 - 26881707
Alignment:
Q  97 atttaatttgtatacactgacgatgtaaa 125  Q
    |||||||||||||||||||||||||||||    
T  26881735 atttaatttgtatacactgacgatgtaaa 26881707  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 153
Target Start/End: Complemental strand, 9685187 - 9685130
Alignment:
Q  96 gatttaatttgtatacactgacgatgtaaaactttttcaaacatgcatccaatcaaat 153  Q
    |||||||||||| |||||||||||||||||||||||  | |||||||| |||||||||    
T  9685187 gatttaatttgtctacactgacgatgtaaaacttttctacacatgcattcaatcaaat 9685130  T

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Target: scaffold0229 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 153
Target Start/End: Complemental strand, 7533 - 7473
Alignment:
Q  93 aaggatttaatttgtatacactgacgatgtaaaactttttcaaacatgcatccaatcaaat 153  Q
    |||||||||||||||||||||| ||  ||||||  ||||| | ||||||||||||||||||    
T  7533 aaggatttaatttgtatacacttacagtgtaaactttttttacacatgcatccaatcaaat 7473  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 153
Target Start/End: Complemental strand, 1281525 - 1281465
Alignment:
Q  93 aaggatttaatttgtatacactgacgatgtaaaactttttcaaacatgcatccaatcaaat 153  Q
    |||||||||||||||||||||| ||  ||||||  ||||| | ||||||||||||||||||    
T  1281525 aaggatttaatttgtatacacttacagtgtaaactttttttacacatgcatccaatcaaat 1281465  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 19726768 - 19726823
Alignment:
Q  98 tttaatttgtatacactgacgatgtaaaactttttcaaacatgcatccaatcaaat 153  Q
    |||||||||||||||  |||| | ||||||||||| | ||||||||||||||||||    
T  19726768 tttaatttgtatacatcgacggtctaaaacttttttacacatgcatccaatcaaat 19726823  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 198
Target Start/End: Original strand, 26387936 - 26388037
Alignment:
Q  97 atttaatttgtatacactgacgatgtaaaactttttcaaacatgcatccaatcaaatga-gtcatgtaaatttgtggagatattttatgaactaacctat 195  Q
    ||||||||| ||||||| ||| ||||||   ||||| | ||||||||||||| |||| | | |||||| |||||||||||| |||||  |||||||||||    
T  26387936 atttaatttatatacaccgacaatgtaatttttttt-agacatgcatccaattaaatcacgccatgtatatttgtggagattttttagaaactaacctat 26388034  T
Q  196 aaa 198  Q
    |||    
T  26388035 aaa 26388037  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 15596367 - 15596419
Alignment:
Q  98 tttaatttgtatacactgacgatgtaaaactttttcaaacatgcatccaatca 150  Q
    ||||||| ||||||| |||| |||||||||| ||| | |||||||||||||||    
T  15596367 tttaattcgtatacattgacaatgtaaaactcttttacacatgcatccaatca 15596419  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 223
Target Start/End: Original strand, 26023606 - 26023712
Alignment:
Q  120 tgtaaaactttttcaaacatgcatccaatcaaatga-gtcatgt--aaatttgtggagatattttatgaactaacctataaaagcggcactacggtgtaa 216  Q
    |||||||| |||| | || ||||||||||||||| | |||| ||  | |||||| || |||||||| ||||||||||||||||| ||||||| ||| | |    
T  26023606 tgtaaaacctttttacacgtgcatccaatcaaatcatgtcacgtggatatttgtagacatattttaggaactaacctataaaagtggcactatggtatga 26023705  T
Q  217 tttgatt 223  Q
    |||||||    
T  26023706 tttgatt 26023712  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 26023760 - 26023705
Alignment:
Q  99 ttaatttgtatacactgacgatgtaaaactttttcaa-acatgcatccaatcaaat 153  Q
    |||||||||||||| |||||  |||||||||||| || ||||||||||||||||||    
T  26023760 ttaatttgtatacattgacggcgtaaaacttttttaacacatgcatccaatcaaat 26023705  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 19266573 - 19266653
Alignment:
Q  165 atttgtggagatattttatgaactaacctataaaagcggcactacggtgtaatttgatttgacacatgtgtaagaaagttt 245  Q
    |||||||||||||||| |  ||||||| | |||||| ||||||   ||| ||||||||| || |||||||||| |||||||    
T  19266573 atttgtggagatatttaagtaactaacttgtaaaagtggcactttcgtgcaatttgattggatacatgtgtaaaaaagttt 19266653  T

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