View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7376_low_11 (Length: 282)
Name: NF7376_low_11
Description: NF7376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7376_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 7e-61; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 22 - 148
Target Start/End: Original strand, 14673239 - 14673365
Alignment:
| Q |
22 |
ctaaagaggatggttctaaattgtaattgagcctgagattactatagtataataatttatttaaaccacaatttccatgtatttggaagatttgaaaacc |
121 |
Q |
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| T |
14673239 |
ctaaagaggatgattctaaattgtgattgagcctgagattactatagtataataatttatttaaaccacaatttccatgtatttggaagatttgaaaacc |
14673338 |
T |
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| Q |
122 |
aatgcaaacaaaacattattatactat |
148 |
Q |
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| T |
14673339 |
aatgcaaacaaaacattattatactat |
14673365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 22 - 148
Target Start/End: Original strand, 14678617 - 14678743
Alignment:
| Q |
22 |
ctaaagaggatggttctaaattgtaattgagcctgagattactatagtataataatttatttaaaccacaatttccatgtatttggaagatttgaaaacc |
121 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14678617 |
ctaaagaggatgattctaaattgtgattgagcctgagattactatagtataataatttatttaaaccacaatttccatgtatttggaagatttgaaaacc |
14678716 |
T |
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| Q |
122 |
aatgcaaacaaaacattattatactat |
148 |
Q |
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| T |
14678717 |
aatgcaaacaaaacattattatactat |
14678743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 14673415 - 14673535
Alignment:
| Q |
154 |
ttattttgactttaaaccccatgt-caagtatttccaagatttgaaaacctatgcaaacaaaatatatatacacacacacattagtcttattttgacttt |
252 |
Q |
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| T |
14673415 |
ttattgtgactttaaaccccatttgcaagtatttccaagatttgaaaacctatgcaaacaaaatatatatacacacacacgttagtcttattttgacttt |
14673514 |
T |
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| Q |
253 |
tctcattactaacagtataat |
273 |
Q |
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| T |
14673515 |
tctcattactaacagtataat |
14673535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 14678793 - 14678913
Alignment:
| Q |
154 |
ttattttgactttaaaccccatgt-caagtatttccaagatttgaaaacctatgcaaacaaaatatatatacacacacacattagtcttattttgacttt |
252 |
Q |
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||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14678793 |
ttattgtgactttaaaccccatttgcaagtatttccaagatttgaaaacctatgcaaacaaaatatatatacacacacacgttagtcttattttgacttt |
14678892 |
T |
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| Q |
253 |
tctcattactaacagtataat |
273 |
Q |
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| T |
14678893 |
tctcattactaacagtataat |
14678913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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