View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7376_low_13 (Length: 263)
Name: NF7376_low_13
Description: NF7376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7376_low_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 263
Target Start/End: Complemental strand, 12802183 - 12801921
Alignment:
| Q |
8 |
tggtgttcttaccttctatggtttagctagaagttctcaacttctcaagatattatgaataaatgagaagattgcaagacaaatccaaatggnnnnnnnn |
107 |
Q |
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| T |
12802183 |
tggtgtttttaccttctatggtttagctagaagttctcaacttctcaagatattatgaataaatgagaagattgtcagacaaatccaaatggtttttttt |
12802084 |
T |
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| Q |
108 |
-------agtagactctaatattatctatttagccgaaatcaattatataatatttcatttgtaaaaatgagtcagactaatggatagatctaaaagttt |
200 |
Q |
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| T |
12802083 |
tttttttagtagactctaatattatctatttagtcgaaatcaattatataatatttcatttgtaaaaatgagtcagattaatggatagatctaaaagttt |
12801984 |
T |
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| Q |
201 |
caaattattcagttacaagattctacaattcttacaattatttttggctaagaacaaaatgga |
263 |
Q |
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| T |
12801983 |
caaattattcagttacaagattctacaattcttacaattaattttggctaagaacaaaatgga |
12801921 |
T |
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