View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7376_low_14 (Length: 236)
Name: NF7376_low_14
Description: NF7376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7376_low_14 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 39554180 - 39554402
Alignment:
| Q |
14 |
gtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcagcaaaagcttcaacaaaatccac |
113 |
Q |
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| T |
39554180 |
gtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcagcaaaagcttcaacaaaatccac |
39554279 |
T |
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| Q |
114 |
tccacgattattgcaaagtaactcaggttcacccatggagttagtcatcacttcaccagcaaaggcataataagaaacaagagccttagctaaagaattt |
213 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
39554280 |
tccacgattgttgcaaagtaactcaggttcacccatggagttagtcatcacttcaccagcaaaggcataataagaaacaagagcctcagttaaagaattt |
39554379 |
T |
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| Q |
214 |
ttcaaacatcccacaatgttatg |
236 |
Q |
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|||||||||||||||||| |||| |
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| T |
39554380 |
ttcaaacatcccacaatgctatg |
39554402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 39544866 - 39545088
Alignment:
| Q |
14 |
gtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcagcaaaagcttcaacaaaatccac |
113 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39544866 |
gtttcttctttggaacaagcttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcagcaaaagcttcaacaaaatccac |
39544965 |
T |
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| Q |
114 |
tccacgattattgcaaagtaactcaggttcacccatggagttagtcatcacttcaccagcaaaggcataataagaaacaagagccttagctaaagaattt |
213 |
Q |
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| T |
39544966 |
tccacgattgttgcaaagtaactcaggttcacccatggagttagtcatcacttcaccagcaaaggcataataagaaacaagagcctcagttaaagaattt |
39545065 |
T |
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| Q |
214 |
ttcaaacatcccacaatgttatg |
236 |
Q |
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| T |
39545066 |
ttcaaacatcccacaatgctatg |
39545088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 39587298 - 39587513
Alignment:
| Q |
15 |
tttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcagcaaaagcttcaacaaaatccact |
114 |
Q |
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| T |
39587298 |
tttcttctttggaacaagcttcccttcaatggtttcctctggcttatacaaatcgagagattgcaactcaacatcagcaacagcttcaacaaaatccaca |
39587397 |
T |
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| Q |
115 |
ccacgattattgcaaagtaactcaggttcacccatggagttagtcatcacttcaccagcaaaggcataataagaaacaagagccttagctaaagaatttt |
214 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||||| | || |||||||||||| | || |||||||||||||| | |||||| ||||||| |
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| T |
39587398 |
ccacggttattgcaaagtagctcaggttcacccatggagttagtaaccatttcaccagcaaatacgtagtaagaaacaagagcttcagctaaggaatttt |
39587497 |
T |
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| Q |
215 |
tcaaacatcccacaat |
230 |
Q |
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|||| || |||||||| |
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| T |
39587498 |
tcaagcaccccacaat |
39587513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 182
Target Start/End: Original strand, 17507055 - 17507221
Alignment:
| Q |
16 |
ttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcagcaaaagcttcaacaaaatccactc |
115 |
Q |
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|||||||| ||||||| || |||||||||| |||||| || ||||| |||||||| |||| | ||||||||||||| ||||||||||||||| || | |
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| T |
17507055 |
ttcttcttaggaacaaactttccttcaacagattcatcagggttataaaaattgaggcattgaagttcaacatcagcaacagcttcaacaaaatcaacac |
17507154 |
T |
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| Q |
116 |
cacgattattgcaaagtaactcaggttcacccatggagttagtcatcacttcaccagcaaaggcata |
182 |
Q |
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| T |
17507155 |
cacgattattacaaagaagctcaggttcacccacagaattggacacaacttcacctgcaaaggcata |
17507221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 17484780 - 17484912
Alignment:
| Q |
16 |
ttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcagcaaaagcttcaacaaaatccactc |
115 |
Q |
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|||||||| ||||||| || |||||||||| |||||| || ||||| |||||||| |||| | |||||||||||||| ||||||||||||||| || | |
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| T |
17484780 |
ttcttcttaggaacaaactttccttcaacagattcatcagggttataaaaattgaggcattgaagctcaacatcagcaacagcttcaacaaaatcaacac |
17484879 |
T |
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| Q |
116 |
cacgattattgcaaagtaactcaggttcaccca |
148 |
Q |
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| T |
17484880 |
cacggttattacaaagaatctcaggttcaccca |
17484912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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