View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7376_low_2 (Length: 596)
Name: NF7376_low_2
Description: NF7376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7376_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 283 - 585
Target Start/End: Original strand, 27638137 - 27638443
Alignment:
| Q |
283 |
ttcatgaatcaagagcctctttgaaggttcatttcaaagagattaagactcgttttattaaaatatattattttatgagtcattctc----tctctttta |
378 |
Q |
| |
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||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||| |
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| T |
27638137 |
ttcatgaatcaagagcctcttgaaaggttcatctcaaagagattaagactcgttttaataaaatatattattttatgagccattctctctctctctttta |
27638236 |
T |
|
| Q |
379 |
aaatgagccttgatcccaactcatgatacatataaattttaacctgtatattgatgagctcgtatgtttcctgcatttgtttctcaaaaagagcagcaag |
478 |
Q |
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||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
27638237 |
aaatgggtcttgatcccaactcatgatacatataaattttaacctgtatattgatgagctcgtgtgtttcctgcatttgtttctcgaaaagagcagcaag |
27638336 |
T |
|
| Q |
479 |
ggcagggaaaattaagacgtttgaagcatgaacatgggaattgataatgggaacaacattcccctgccactgttgttgattttgtggtggttgttgttga |
578 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27638337 |
ggcaggggaaattaagacgtttgaagcatgaacatgagaattgataatgggaacaacattcccctgccactgttgttgattttgtggtggttgttgttga |
27638436 |
T |
|
| Q |
579 |
taatatt |
585 |
Q |
| |
|
||||||| |
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|
| T |
27638437 |
taatatt |
27638443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 283 - 584
Target Start/End: Original strand, 37354328 - 37354626
Alignment:
| Q |
283 |
ttcatgaatcaagagcctctttgaaggttcatttcaaagagattaagactcgttttattaaaatatattattttatgagtcattctctctcttttaaaat |
382 |
Q |
| |
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||||||||| ||||| ||||| |||||| || ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
37354328 |
ttcatgaattaagagtctcttgaaaggtttatctcagagagattaagactcgttttataaaaatatattattttatgagtcattctctca--tttaaaat |
37354425 |
T |
|
| Q |
383 |
gagccttgatcccaactcatgatacatataaattttaacctgtatattgatgagctcgtatgtttcctgcatttgtttctcaaaaagagcagcaagggca |
482 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
37354426 |
ggaccttgatcccaactcatgatacatataaattttaacatgtatattgatgagctggtgtgtttcctgcatttgtttctcaaaaagagcagcaagggc- |
37354524 |
T |
|
| Q |
483 |
gggaaaattaagacgtttgaagcatgaacatgggaattgataatgggaacaacattcccctgccactgttgttgattttgtggtggttgttgttgataat |
582 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
37354525 |
gggaaaattaagacgtttgaagcatggacatgagaattgataatgggaacaacattcccctgccactgttgttgattttgtggttgttgttgttgatgat |
37354624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 283 - 584
Target Start/End: Original strand, 37366302 - 37366600
Alignment:
| Q |
283 |
ttcatgaatcaagagcctctttgaaggttcatttcaaagagattaagactcgttttattaaaatatattattttatgagtcattctctctcttttaaaat |
382 |
Q |
| |
|
||||||||| ||||| ||||| |||||| || ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
37366302 |
ttcatgaattaagagtctcttgaaaggtttatctcagagagattaagactcgttttataaaaatatattattttatgagtcattctctca--tttaaaat |
37366399 |
T |
|
| Q |
383 |
gagccttgatcccaactcatgatacatataaattttaacctgtatattgatgagctcgtatgtttcctgcatttgtttctcaaaaagagcagcaagggca |
482 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
37366400 |
ggaccttgatcccaactcatgatacatataaattttaacatgtatattgatgagctggtgtgtttcctgcatttgtttctcaaaaagagcagcaagggc- |
37366498 |
T |
|
| Q |
483 |
gggaaaattaagacgtttgaagcatgaacatgggaattgataatgggaacaacattcccctgccactgttgttgattttgtggtggttgttgttgataat |
582 |
Q |
| |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
37366499 |
gggaaaattaagacgtttgaagcatggacatgagaattgataatgggaacaacattcccctgccactgttgttgattttgtggttgttgttgttgatgat |
37366598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 98 - 198
Target Start/End: Original strand, 27637949 - 27638049
Alignment:
| Q |
98 |
ttgttataatttgctgtgaataaatttccatacttctaaatgtagccacttgttgctctgtatggtgttgtaacatgaattttatttgattattctgata |
197 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| |
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| T |
27637949 |
ttgttagaatttgttgtgaataaatttccatacttctaaatgtagccacttgttgctctgtatgttgttgtaacatgaattttatttgatcattctaata |
27638048 |
T |
|
| Q |
198 |
c |
198 |
Q |
| |
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| |
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|
| T |
27638049 |
c |
27638049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 98 - 198
Target Start/End: Original strand, 37354142 - 37354242
Alignment:
| Q |
98 |
ttgttataatttgctgtgaataaatttccatacttctaaatgtagccacttgttgctctgtatggtgttgtaacatgaattttatttgattattctgata |
197 |
Q |
| |
|
|||||| |||||| || |||||||||||||| ||||||||| ||||||||||| |||||||||| ||||||||||||||||| |||||| ||||||||| |
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|
| T |
37354142 |
ttgttagaatttgttgcgaataaatttccatgcttctaaatatagccacttgtagctctgtatgatgttgtaacatgaatttcgtttgatcattctgata |
37354241 |
T |
|
| Q |
198 |
c |
198 |
Q |
| |
|
| |
|
|
| T |
37354242 |
c |
37354242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 98 - 198
Target Start/End: Original strand, 37366116 - 37366216
Alignment:
| Q |
98 |
ttgttataatttgctgtgaataaatttccatacttctaaatgtagccacttgttgctctgtatggtgttgtaacatgaattttatttgattattctgata |
197 |
Q |
| |
|
|||||| |||||| || |||||||||||||| ||||||||| ||||||||||| |||||||||| ||||||||||||||||| |||||| ||||||||| |
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|
| T |
37366116 |
ttgttagaatttgttgcgaataaatttccatgcttctaaatatagccacttgtagctctgtatgatgttgtaacatgaatttcgtttgatcattctgata |
37366215 |
T |
|
| Q |
198 |
c |
198 |
Q |
| |
|
| |
|
|
| T |
37366216 |
c |
37366216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 568
Target Start/End: Complemental strand, 12242243 - 12242076
Alignment:
| Q |
401 |
atgatacatataaattttaacctgtatattgatgagctcgtatgtttcctgcatttgtttctcaaaaagagcagcaagggcagggaaaattaagacgttt |
500 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| || || ||| |||| | ||||||||||||||||| | ||| | || || |||||| | || |
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|
| T |
12242243 |
atgatacatataaattttaacctgattattgatgatctggtttgtctccttcgcttgtttctcaaaaagagaatcaaaagttggataacttaagatgctt |
12242144 |
T |
|
| Q |
501 |
gaagcatgaacatgggaattgataatgggaacaacattcccctgccactgttgttgattttgtggtgg |
568 |
Q |
| |
|
|||||||||||||| | |||| | |||||| || || || |||| ||||||||||| ||||||||| |
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|
| T |
12242143 |
gaagcatgaacatgaggattggaagtgggaagaagatggccttgcccctgttgttgatgttgtggtgg |
12242076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 401 - 562
Target Start/End: Complemental strand, 12292037 - 12291876
Alignment:
| Q |
401 |
atgatacatataaattttaacctgtatattgatgagctcgtatgtttcctgcatttgtttctcaaaaagagcagcaagggcagggaaaattaagacgttt |
500 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| || || ||| ||| | |||||||||||| |||| | ||| || ||| || |||||| | || |
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|
| T |
12292037 |
atgatacatataaatattaacctgattattgatgaactggtttgtctccatgacttgtttctcaaatagagaatcaaaggaaggataacttaagatgctt |
12291938 |
T |
|
| Q |
501 |
gaagcatgaacatgggaattgataatgggaacaacattcccctgccactgttgttgattttg |
562 |
Q |
| |
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||||| || ||||| | ||||| || ||||||||||| || |||||| ||||||||||||| |
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|
| T |
12291937 |
gaagcttggacatgaggattgaaaaagggaacaacatggccatgccacagttgttgattttg |
12291876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 350 - 466
Target Start/End: Original strand, 34720866 - 34720980
Alignment:
| Q |
350 |
ttattttatgagtcattctctctcttttaaaatgagccttgatcccaactcatgatacatataaattttaacctgtatattgatgagctcgtatgtttcc |
449 |
Q |
| |
|
||||||||||||| ||| ||||||||| ||||| |||||||| ||||| || ||||||| |||||| ||||||||||||||||| | || ||||||| |
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| T |
34720866 |
ttattttatgagt-att-tctctctttcgaaatggaccttgatcgtaactcttgttacatatcaatttttacctgtatattgatgagttggtctgtttcc |
34720963 |
T |
|
| Q |
450 |
tgcatttgtttctcaaa |
466 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
34720964 |
tgcccttgtttctcaaa |
34720980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 568
Target Start/End: Original strand, 27912258 - 27912416
Alignment:
| Q |
410 |
ataaattttaacctgtatattgatgagctcgtatgtttcctgcatttgtttctcaaaaagagcagcaagggcagggaaaattaagacgtttgaagcatga |
509 |
Q |
| |
|
||||||||||||||| ||||||||| | || ||| |||| | |||||||| ||| |||| | ||| || ||| || |||||| | ||||||||||| |
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| T |
27912258 |
ataaattttaacctgattattgatgaattggtttgtctccttaacttgtttctgaaatagagaatcaaaggtaggataacttaagatgcttgaagcatga |
27912357 |
T |
|
| Q |
510 |
acatgggaattgataatgggaacaacattcccctgccactgttgttgattttgtggtgg |
568 |
Q |
| |
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||||| | ||| | || |||||||| || ||||||||||||||||||| |||| |||| |
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|
| T |
27912358 |
acatgaggattcaaaaagggaacaatatgaccctgccactgttgttgatgttgttgtgg |
27912416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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