View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7376_low_4 (Length: 522)
Name: NF7376_low_4
Description: NF7376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7376_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 20 - 346
Target Start/End: Complemental strand, 4554304 - 4553961
Alignment:
| Q |
20 |
aatgcaaagcaccaagagcatgaatattactttggatcccatggctaaagaataatatagtataggtattgattattttgacacaaaatggaagacagag |
119 |
Q |
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| T |
4554304 |
aatgcaaagcaccaagagcatgaatattactttggatcccatggctaaagaataatatagtataggtattgattattttgacacaaaatggaagacagag |
4554205 |
T |
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| Q |
120 |
atatttctatatata----cagatatacatg------acattattggtaacatgaactatatatgtacattgcttaactataagttagctagcgatgtct |
209 |
Q |
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| T |
4554204 |
atatttctatatatatatacagatatacatgtacatgacattattggtaacatgaactatatatgtacattgcttaactataagttagctagcgatgtct |
4554105 |
T |
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| Q |
210 |
gcatgagttaccgtctatatatttgtcattcatcttctgtttaattcacgattttctttcatcgtt-------gaaatctcaaatgcatgcttcatttat |
302 |
Q |
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| T |
4554104 |
gcatgagctaccgtctatatatttgtcattcatcttctgtttaattcacgattttctttcatcgttgaaacttgaaatctcaaatgcatgcttcatttat |
4554005 |
T |
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| Q |
303 |
catccaccttcccttcccatacgaaagaataaaggagaaataag |
346 |
Q |
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| T |
4554004 |
catccaccttcccttcccatacgaaagaataaaggagaaataag |
4553961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 408 - 522
Target Start/End: Complemental strand, 4553899 - 4553776
Alignment:
| Q |
408 |
tgagttgggtccaagattcactaaggtcaaaaacttcaaaactcagaaaactta---------aaaagatacttacatatatattagcaatgatgtccgc |
498 |
Q |
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| T |
4553899 |
tgagttgggtccaagattcactaaggtcaaaaacttcaaaacttagaaaacttagaaaacttaaaaagatacttacatatatattagcaatgatgtccgc |
4553800 |
T |
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| Q |
499 |
acatcaacaacggatcgaacccta |
522 |
Q |
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| T |
4553799 |
acatcaacaacggatcgaacccta |
4553776 |
T |
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