View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7376_low_5 (Length: 481)
Name: NF7376_low_5
Description: NF7376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7376_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 36222891 - 36223352
Alignment:
| Q |
1 |
attcacaagcaatcaagattgggagagaattaggagaaatcaaaagagaagaaagagaaatcaatgtgattgtaaactatgttctcattagtaatgaaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36222891 |
attcacaagcaatcaagattgggagagaattaggagaaatcaagagagaagaaagagaaatcaatgtgattgtaaactatgttctcattagtaatgaaaa |
36222990 |
T |
|
| Q |
101 |
tctgagattacaagcttatatacaactacttatgtcgcttacttgcaatacaagtaatcaatcaaaactaactaactccatcaaaatagctaaccaaaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36222991 |
tctgagattacaagcttatatacaactacttatatggcttacttgcaatacaagtaatcaatcaaa-ctaactaactccatcaaaatagctaaccaaaaa |
36223089 |
T |
|
| Q |
201 |
ctaactgtttttaactactcnnnnnnnc-aactaacttgaattaaaatacaacaaaagtaagaattataccatatttatcagttcctttcaacttatctt |
299 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36223090 |
ctaactgtttttaactactctttttttccaactaacttgaattaaaatacaacaaaagtaagaattataccatatttatcagttcctttcaacttatctt |
36223189 |
T |
|
| Q |
300 |
tgatttatttagacaactcaagcacttctagtgtctgcacattgaacaaaacaattattcagcttgcaagagaacaaacatcaattcccacaacaacaat |
399 |
Q |
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| T |
36223190 |
tgatttatttagacaactcaagcacttctagtgtctgcacattgaacaaaacaattattcagcttgcaagagaacaaacatcaattcccacaacaacaat |
36223289 |
T |
|
| Q |
400 |
ctaataagtattaaagagtcacctgagtaactttggagactgaaattgcaattgcggcctttg |
462 |
Q |
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| T |
36223290 |
ctaataagtattaaagagtcacctgagtaactttggagactgaaattgcaattgcggcctttg |
36223352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 36226937 - 36227157
Alignment:
| Q |
1 |
attcacaagcaatcaagattgggagagaattaggagaaatcaaaagagaagaaagagaaatcaatgtgattgtaaactatgttctcatta----gtaatg |
96 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
36226937 |
attcacaagcaatcgagattgggagagaattaggggaaat-aagagagaagaaagagagatcaatgtgattgtaaactatgttctcattatttagtaatg |
36227035 |
T |
|
| Q |
97 |
aaaatctgagattacaagcttatatacaactacttatgtcgcttacttgcaatacaagtaatcaatcaaaactaactaactccatcaaaatagctaacca |
196 |
Q |
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||||||| |||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| | |
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| T |
36227036 |
aaaatctaagattacaagcttatata-aacaacttatgtggcttacttgcaatacaagtaatcaatcaaaaccaaccaactcgatcaaaatagctaacaa |
36227134 |
T |
|
| Q |
197 |
aaaactaactgtttttaactact |
219 |
Q |
| |
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| ||||||||||||||||||||| |
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| T |
36227135 |
acaactaactgtttttaactact |
36227157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 348 - 462
Target Start/End: Original strand, 36227185 - 36227301
Alignment:
| Q |
348 |
aaacaattattcagcttgcaagagaacaaacatcaattccca--caacaacaatctaataagtattaaagagtcacctgagtaactttggagactgaaat |
445 |
Q |
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|
|||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| |
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| T |
36227185 |
aaacaattgttcagcttgcaagagaacaaacatcaactcccatacaacaacaatctaataagtactaaagagtcacctgagtgagtttggagactgaaat |
36227284 |
T |
|
| Q |
446 |
tgcaattgcggcctttg |
462 |
Q |
| |
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||||||||| ||||||| |
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| T |
36227285 |
tgcaattgcagcctttg |
36227301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 13575558 - 13575506
Alignment:
| Q |
62 |
caatgtgattgtaaactatgttctcattagt-aatgaaaatctgagattacaa |
113 |
Q |
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||||||||||||||| | ||||||||||||| ||||||||| |||||||||| |
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| T |
13575558 |
caatgtgattgtaaagtgtgttctcattagtgaatgaaaattagagattacaa |
13575506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 69 - 211
Target Start/End: Complemental strand, 28067445 - 28067302
Alignment:
| Q |
69 |
attgtaaactatgttctcattagtaa-tgaaaatctgagattacaagcttatatacaactacttatgtcgcttacttgcaatacaagtaatcaatcaaaa |
167 |
Q |
| |
|
||||||||||||||| |||||||||| |||| || |||||||||| | || ||||||| || |||| | ||||||| ||||||||||||| | |||||| |
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| T |
28067445 |
attgtaaactatgttttcattagtaaatgaagatatgagattacaggtttttatacaattatttatatgacttacttccaatacaagtaattattcaaaa |
28067346 |
T |
|
| Q |
168 |
ctaactaactccatcaaaatagctaaccaaaaactaactgtttt |
211 |
Q |
| |
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||||||||||||||||||||||||||| || | |||||||||| |
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| T |
28067345 |
ctaactaactccatcaaaatagctaacaaactaataactgtttt |
28067302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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