View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7376_low_6 (Length: 430)
Name: NF7376_low_6
Description: NF7376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7376_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 4458305 - 4457892
Alignment:
| Q |
1 |
ttgtgggcaagatagatagcagatttgttgtcacagtaaactgcagaaggcgtaaagaggggattaagaagatcattaagtaaacagtgaagccattgaa |
100 |
Q |
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| T |
4458305 |
ttgtgggcaaggtagatagtggatttgttgtcacagtaaactgcagaaggcgtaaagaggggattaagaagatcattaagtaaacagtgaagccattgaa |
4458206 |
T |
|
| Q |
101 |
tttcacaagtaagactagctaaggctctatactcaaccttggaagaggagcgagatatggtatttttcttcttggacttctaggaaattagagaagggcc |
200 |
Q |
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| T |
4458205 |
tttcacaagtaagactagctaaggctctatactcaaccttggaagaggagcgagatatggtatttttcttcttggacttctaggaaattagagaaggacc |
4458106 |
T |
|
| Q |
201 |
caaaaagacacaatatccagtaactgacttgcgagaatccaagcagcatgcctaatctgagtcggaaaaactagataaagacaatgaattgaaggtagga |
300 |
Q |
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| T |
4458105 |
-aaaagtacacaatatccaataactgacttgcgagaatccaagcagcatgcctaatctgagtcggaaaaactagataaagacaatgaattgaaggtagga |
4458007 |
T |
|
| Q |
301 |
aagaataacccctgagctggggcagatttgagatactttaatactctgatggcagcttggaaataagtttcaagaggcttatgaacaaattgactaagtt |
400 |
Q |
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| T |
4458006 |
aagaataacccctgagctggggcagatttgagatactttaatactctgatggcagcttggaaataagtttcaagaggcttatgaacaaattgactaagtt |
4457907 |
T |
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| Q |
401 |
gttgtaaagggaatg |
415 |
Q |
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| T |
4457906 |
gttgtaaagggaatg |
4457892 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 8639743 - 8639703
Alignment:
| Q |
88 |
tgaagccattgaatttcacaagtaagactagctaaggctct |
128 |
Q |
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| T |
8639743 |
tgaagccattgaatctcacaagtaaggctggctaaggctct |
8639703 |
T |
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