View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7376_low_7 (Length: 415)
Name: NF7376_low_7
Description: NF7376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7376_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 9e-80; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 103 - 261
Target Start/End: Complemental strand, 42579658 - 42579500
Alignment:
| Q |
103 |
tggaaatggtggaaaagaatcatgtgttgcaaaatggccatatttgggactatgcgaatgagcttagaagaagcaacctaggtcaagagtaaagataaat |
202 |
Q |
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| T |
42579658 |
tggaaatggtggaaaagaatcatgtgttgcaaaatggccatatttgggactatgcgaatgagcttagaagaagcaacctaggtcaagagtaaagataaat |
42579559 |
T |
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| Q |
203 |
ggtgtccttgttcatgaggcttcaccacaattccaaagcttttatatattgttaacact |
261 |
Q |
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| T |
42579558 |
ggtatccttgttcgtgaggcttcaccacaattccaaagcttttatatattgttaacact |
42579500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 329 - 407
Target Start/End: Complemental strand, 42579471 - 42579393
Alignment:
| Q |
329 |
agccagaatatgatattcccaaatgacaaaaaatcccatactcaagaaaatgtaaattgtgtctgtgtccagtattatc |
407 |
Q |
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| T |
42579471 |
agccagaatatgatattcccaaatgacaaaaaatcccatactcaagaaaatgtaaattgtgtctatgtccagaattatc |
42579393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 42584197 - 42584117
Alignment:
| Q |
19 |
ctatgtaagttattgttggattacgatggatggaagctcgggagattgtccaccatattgtgtcaaaagtaactaaacaagtggt |
103 |
Q |
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| T |
42584197 |
ctatgtaagttattgttggattacgatgga----agcttgggagattgtccatcatattgtgtcaaaggtaactaaacaagtggt |
42584117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 348 - 399
Target Start/End: Complemental strand, 42597625 - 42597575
Alignment:
| Q |
348 |
caaatgacaaaaaatcccatactcaagaaaatgtaaattgtgtctgtgtcca |
399 |
Q |
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| T |
42597625 |
caaatgacaaaaaattccatactcaagcaaatgtagattgtgt-tgtgtcca |
42597575 |
T |
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