View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7376_low_9 (Length: 391)
Name: NF7376_low_9
Description: NF7376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7376_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 33270401 - 33270015
Alignment:
| Q |
1 |
tgcaggttgggatttcttgtggattttttgtcacatgctgcacttgtaggattcatggcaggtgcagccatcatgattggtctgcagcagcttaaggggt |
100 |
Q |
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| T |
33270401 |
tgcaggttgggatttcttgtggattttttgtcacatgctgcacttgtaggattcatggcaggtgcagccatcatgattggtctgcagcagcttaaggggt |
33270302 |
T |
|
| Q |
101 |
tgcttgggattagtaacttcaccaacaaatccgatgttgtttctgttttggaatctgtttataagtcactccatcatcaaattccatccggagaagtaag |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33270301 |
tgcttgggattagtaacttcaccaacaaatctgatgttgtttctgttttggaatctgtttataagtcactccatcatcaaattccatccggagaagtaag |
33270202 |
T |
|
| Q |
201 |
tacttttttcattttctgggagagaaattcaaatattataaccatagttcccaagtatattgtaattgcaaaattatccttgaacgtgttctctgttagt |
300 |
Q |
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| T |
33270201 |
tacttttttcattttctgggagagaaattcaaatattataaccatagttcccaagtatattgtaattgcaaaaatatccttgagtgtgttctttgttagt |
33270102 |
T |
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| Q |
301 |
aaactcgtggactaaacaaactaatgagaaagtagaaacatattcgaggattaaactaattaatgaaagatatttgaacacgaaact |
387 |
Q |
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| T |
33270101 |
aaactcgtggactaaacaaactaatgagaaagtagaaacatattcgaggattaaactaactcatgaaagatatttgaagacgaaact |
33270015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 39751605 - 39751685
Alignment:
| Q |
3 |
caggttgggatttcttgtggattttttgtcacatgctgcacttgtaggattcatggcaggtgcagccatcatgattggtct |
83 |
Q |
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| T |
39751605 |
caggttggggttccttgtggattttctgtcacatgctgcaattgttggatttgtagcaggagctgccattgtgattggtct |
39751685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 34662170 - 34662031
Alignment:
| Q |
24 |
ttttttgtcacatgctgcacttgtaggattcatggcaggtgcagccatcatgattggtctgcagcagcttaaggggttgcttgggattagtaacttcacc |
123 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||||||| ||| |||| |||||||| ||||||||| |
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| T |
34662170 |
ttttttatcacatgctgcacttgtaggatttatggcaggtgcagccatcttgattggtcttcaa-agcttaaagggctgctagggattagcaacttcacc |
34662072 |
T |
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| Q |
124 |
aacaaatccgatgttgtttctgttttggaatctgtttataa |
164 |
Q |
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| T |
34662071 |
aacaaatctgatgttgtttgtgttttggaatctgtttataa |
34662031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 3 - 183
Target Start/End: Complemental strand, 25707237 - 25707057
Alignment:
| Q |
3 |
caggttgggatttcttgtggattttttgtcacatgctgcacttgtaggattcatggcaggtgcagccatcatgattggtctgcagcagcttaaggggttg |
102 |
Q |
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||||||||| ||||||||||||||| | |||||||||||||| || |||||||||||||| ||||| ||||| |||||||| |||||||| ||||| | |
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| T |
25707237 |
caggttgggttttcttgtggattttctttcacatgctgcactagttggattcatggcaggagcagcaatcattattggtcttcagcagctcaagggtctt |
25707138 |
T |
|
| Q |
103 |
cttgggattagtaacttcaccaacaaatccgatgttgtttctgttttggaatctgtttataagtcactccatcatcaaatt |
183 |
Q |
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| ||||||| | ||||||||| |||| | |||| || || || |||| ||||||||||||||| | ||||| |||||| |
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| T |
25707137 |
ttggggattactcacttcaccaccaaaacagatgcagtatcagtattggtttctgtttataagtcattacatcaacaaatt |
25707057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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