View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7377_high_10 (Length: 245)
Name: NF7377_high_10
Description: NF7377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7377_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 53459113 - 53458943
Alignment:
| Q |
1 |
aactctgtttattctcttgtaaaatacaacctgcagcagattaaaaccaccttagttcataattctcttacatttcctatttttgcaacaaacatatgta |
100 |
Q |
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| T |
53459113 |
aactctgtttattctcttgtaaaatacaacctgcagcagattaaaaccaccttagttcataattctcttacatttcctatttttgcaacaaacatatgta |
53459014 |
T |
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| Q |
101 |
aagtaataatataatatgcaatacactaatagtaagaaaattatttttgactgcacacatttgcatagcaa |
171 |
Q |
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| T |
53459013 |
aagtaataatataatatgcaatacactaatagtaagaaaattatttttgactgcacacctttgcatagcaa |
53458943 |
T |
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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 53458905 - 53458838
Alignment:
| Q |
164 |
catagcaagaaaattaatctactaatttggtaaagattaaagagaacctgttgtgatatgtattgctt |
231 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
53458905 |
cataacaagaaaattaatctactaatttggtaaagattaaagagaacctgttgcgatatgtattgctt |
53458838 |
T |
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