View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7377_high_12 (Length: 238)
Name: NF7377_high_12
Description: NF7377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7377_high_12 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 1083998 - 1083776
Alignment:
| Q |
16 |
gtcttatcacttgtgcttcttactgtcactttccgacaaaccgaaactcattctccaatgataagtgaaatagaaacttatcgtttcaacaacacttgtc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1083998 |
gtcttatcacttgtgcttcttactgtcactttccgacaaaccgaaactcattctccaatgataagtgaaatagaaacttatcgtttcaacaacacctgtc |
1083899 |
T |
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| Q |
116 |
ctgcttttactccttctcgtggcggatgggactgcacaacgtgtttaaaggcttcaccaaaatgtggattttgtgcatcggactctaacaaggtaaatac |
215 |
Q |
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| T |
1083898 |
ctgcttttactccttctcgtggcggatgggactgcacaacgtgtttaaaggcttcaccaaaatgtggattttgtgcatctgactctaacaaggtaaatat |
1083799 |
T |
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| Q |
216 |
acaatcttcctctttccataggc |
238 |
Q |
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| T |
1083798 |
gcaatcttcctctttccataggc |
1083776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 33116414 - 33116552
Alignment:
| Q |
16 |
gtcttatcacttgtgcttcttactgtcactttccgacaaaccgaaactcattctccaatgataagtgaaatagaaacttatcgtttcaacaacacttgtc |
115 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
33116414 |
gtcttatcacttgtgcttcttactgtcactttctgacaaaccgaaactcattctccaatgataagtgaaatagaaacttatcatttcaacaacacctgtc |
33116513 |
T |
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| Q |
116 |
ctgcttttactccttctcgtggcggatgggactgcacaa |
154 |
Q |
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| T |
33116514 |
ctgcttttactccttctcgtggcggatgggactgcacaa |
33116552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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