View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7377_high_3 (Length: 412)

Name: NF7377_high_3
Description: NF7377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7377_high_3
NF7377_high_3
[»] chr4 (6 HSPs)
chr4 (10-394)||(5212465-5212849)
chr4 (45-144)||(5181739-5181838)
chr4 (45-144)||(5159504-5159603)
chr4 (45-144)||(5195137-5195236)
chr4 (10-144)||(4843002-4843132)
chr4 (20-144)||(5172490-5172610)


Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 394
Target Start/End: Complemental strand, 5212849 - 5212465
Alignment:
Q  10 aagaatatatatttacaaatcaaaccaataatttcattatttgtgtttggtaatattaataccttcaagtgagccgttcatttgattgttgcaaaaactt 109  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5212849 aagaatatat-tttacaaatcaaaccaataatttcattatttgtgtttggtaatattaataccttcaagtgagccgttcatttgattgttgcataaactt 5212751  T
Q  110 agcattttcaagtttctcaaatgttgaacatctgcggtnnnnnnnnnnnncaaatgtatgttagagatatagttttcaataaactgagatcacaactgct 209  Q
    ||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5212750 agcattttcaagtttctcaaatgttgaacatctgcggtaaaaaagaaaaacaaatgtatgttagagatatagttttcaataaactgagatcacaactgct 5212651  T
Q  210 gtaataaattcctttaaaaa-gaaaactgctctaataaacatcatcaactctatttggttttccacaaatcaagctagatttaacaatagagttattcct 308  Q
     ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5212650 ataataaattcctttaaaaaagaaaattgctctaataaacatcatcaactctatttggttttccacaaatcaagctagatttaacaatagagttattcct 5212551  T
Q  309 aggaaatcaacaatttctcccttcattccaaatgattccctttaggaaataaaactaaggattcaaccaactctatcagtgacttc 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5212550 aggaaatcaacaatttctcccttcattccaaatgattccctttaggaaataaaactaaggattcaaccaactctatcagtgacttc 5212465  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 5181838 - 5181739
Alignment:
Q  45 attatttgtgtttggtaatattaataccttcaagtgagccgttcatttgattgttgcaaaaacttagcattttcaagtttctcaaatgttgaacatctgc 144  Q
    ||||||||||||||||| |||| |||||||||| |||||||||||||||||| || |  ||||||| ||||||||||||| |||||||||||||||||||    
T  5181838 attatttgtgtttggtagtattgataccttcaattgagccgttcatttgattatttcttaaacttaacattttcaagtttttcaaatgttgaacatctgc 5181739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 5159603 - 5159504
Alignment:
Q  45 attatttgtgtttggtaatattaataccttcaagtgagccgttcatttgattgttgcaaaaacttagcattttcaagtttctcaaatgttgaacatctgc 144  Q
    ||||||||||||||||| |||| |||||||||| |||||||||||||||||| | ||  ||| ||| ||||||||||||| |||||||||||||||||||    
T  5159603 attatttgtgtttggtagtattcataccttcaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgc 5159504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 5195236 - 5195137
Alignment:
Q  45 attatttgtgtttggtaatattaataccttcaagtgagccgttcatttgattgttgcaaaaacttagcattttcaagtttctcaaatgttgaacatctgc 144  Q
    ||||||||||||||||| |||| |||||||||| |||||||||||||||||| | |   ||||||| ||||||||| ||| |||||||||||||||||||    
T  5195236 attatttgtgtttggtagtattgataccttcaattgagccgttcatttgattatcgtttaaacttaacattttcaaatttttcaaatgttgaacatctgc 5195137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 4843002 - 4843132
Alignment:
Q  10 aagaatatatatttacaaatcaaaccaataatttcattatttgtgtttggtaatattaataccttcaagtgagccgttcatttgattgttgcaaaaactt 109  Q
    ||||| ||||||||||||||||| ||||| |    ||||||| |||||| || |||| |||||||||| |||||| ||||||||||| | ||  || |||    
T  4843002 aagaaaatatatttacaaatcaacccaatta----attatttatgtttgatagtattgataccttcaattgagcccttcatttgattatcgcttaacctt 4843097  T
Q  110 agcattttcaagtttctcaaatgttgaacatctgc 144  Q
    | ||||||||||||| |||||||||||||||||||    
T  4843098 aacattttcaagtttttcaaatgttgaacatctgc 4843132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 5172610 - 5172490
Alignment:
Q  20 atttacaaatcaaaccaataatttcattatttgtgtttggtaatattaataccttcaagtgagccgttcatttgattgttgcaaaaacttagcattttca 119  Q
    ||||||||||||||||||| |    ||||||| |||||| || |||| |||||||||| |||||||||||||||||| | ||  ||||||| ||||||||    
T  5172610 atttacaaatcaaaccaatta----attatttatgtttgatagtattgataccttcaattgagccgttcatttgattatagcttaaacttaacattttca 5172515  T
Q  120 agtttctcaaatgttgaacatctgc 144  Q
    | ||| |||| ||||||||||||||    
T  5172514 attttttcaagtgttgaacatctgc 5172490  T

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