View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7377_high_5 (Length: 350)
Name: NF7377_high_5
Description: NF7377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7377_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 326
Target Start/End: Complemental strand, 4997416 - 4997109
Alignment:
| Q |
19 |
taaactcgccggaatgtcacctgtgaaaaggttattagacaaattgagcacattcagttttggtaatcggccaaaactcgctggaatgtcaccggagaag |
118 |
Q |
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| T |
4997416 |
taaactcactggaatgtcacctgtgaaaaggttattagacaaattgagcacattcagttttggtaatcggccaaaactcgctggaatgtcaccggagaag |
4997317 |
T |
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| Q |
119 |
ttgtttcctgtggcgtcaagtactcttagttcaaagatttctgagttgaaatctggtaaggctccaacgaataagttgtcggagatgttcaagaaatgaa |
218 |
Q |
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| T |
4997316 |
ttgtttcctgtggcgtcaagtactcttagttcaaagatttctgagttgaaatctggtaaggctccaacgaataagttgtcggagatgttcaagaaatgaa |
4997217 |
T |
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| Q |
219 |
ggtgggagcagggtagcatggaatgtgaggaaatagcattaccaagaaaattggtagcaagtgaaagattttggagtgttggaatatgacagaaattaga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4997216 |
ggtgggagcagggtagcatggaatgtgaggaaatagcattaccaagaaaattcgtagcaagtgaaagattttggagtgttggaatatgacagaaattaga |
4997117 |
T |
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| Q |
319 |
tggaaaat |
326 |
Q |
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|||||||| |
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| T |
4997116 |
tggaaaat |
4997109 |
T |
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