View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7377_high_8 (Length: 290)
Name: NF7377_high_8
Description: NF7377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7377_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 7 - 272
Target Start/End: Complemental strand, 52207194 - 52206929
Alignment:
| Q |
7 |
ttggtgttatgatgactttcattgattgattatatggcaagtagatgatggtatttatcatgaaagaaaagtcagaaacattgaaaaacttgaaacataa |
106 |
Q |
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| T |
52207194 |
ttggtgttatgatgactttcattgattgattatatagcaagtagatgatggtatttatcatgaaagaaaagtcagaaacattgaaaaacttgaaacataa |
52207095 |
T |
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| Q |
107 |
catttgaagaacaatttgaatactgaagtcgaaataaagatctatttctttgcattgacaatagaaaaaagttctcattcttaacatgtctatgcatttt |
206 |
Q |
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| T |
52207094 |
catttgaagaacaatttgaatactgaagtcgaaataaagatctatttctttgcattgacaatagaaaaaagttctcattcttaacatgtctatgcatttt |
52206995 |
T |
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| Q |
207 |
atattcctgatataaaacctgtcccaatgttaccaaacaattttgtgaagaatgttgcacgccaat |
272 |
Q |
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| T |
52206994 |
atattcctgatataaaacctgtcccaatattaccaaacaattttgtgaagaatgttgcacgccaat |
52206929 |
T |
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Back To:
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Target: chr7 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 14 - 180
Target Start/End: Original strand, 27607323 - 27607487
Alignment:
| Q |
14 |
tatgatgactttcattgattgattatatggcaagtagatg-atggtatttatcatgaaagaaaagtcagaaacattgaaaaacttgaaacataacatttg |
112 |
Q |
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| T |
27607323 |
tatgatgactttcattgattgataatagg--aagtagatggatggtatttatcatgaaagaaaaatcagaaa-attgaaaaacttgaaacacagcgttgc |
27607419 |
T |
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| Q |
113 |
aagaacaatttgaatactgaagtcgaaataaagatctatttctttgcattgacaatagaaaaaagttc |
180 |
Q |
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| T |
27607420 |
aaaaacaaattgaatactgaaatcgtaataaagatttatttctttgcattgccagtagaaaagagttc |
27607487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 273
Target Start/End: Original strand, 27607525 - 27607613
Alignment:
| Q |
185 |
tcttaacatgtctatgcattttatattcctgatataaaacctgtcccaatgttaccaaacaattttgtgaagaatgttgcacgccaatt |
273 |
Q |
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| T |
27607525 |
tcttaacatgtctatgcattttactttccttagataaaacatgccccaatattaccaaacagatttgtgaagcatgttgcatgccaatt |
27607613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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