View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7377_low_1 (Length: 588)
Name: NF7377_low_1
Description: NF7377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7377_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 11 - 571
Target Start/End: Original strand, 41905177 - 41905737
Alignment:
| Q |
11 |
agtttggtgttttggataaaatggtaatttgaaggaaatctgacggctatgcaagttataactcattcgcggggatagcacgaagttttaactcgtacac |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
41905177 |
agtttggtgttttggataaaatggtaatttgaaggaaatctgatggctatgcaagttataactcattcgcggggataacacgaggttttaactcgtacac |
41905276 |
T |
|
| Q |
111 |
tttaacattattctttactaaattgtttacaaatataaatatctcctttgtatccttggtgattctcctatttatacacgatactctcaaactaatcaat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41905277 |
tttaacattattctttactaaattgtttgcaaatataaatatctcctttgtatccttggtgattctcctatttatacacgatactctcaaactaatcaat |
41905376 |
T |
|
| Q |
211 |
taacaaactcttccataacccatatcctaacaaactaacattatatcctaacaaggtcaaaaatcttaatcaccttcccaatatatcccatatgtttaat |
310 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41905377 |
taacaaactcctccataacccatatcctaacaaactaacattatatcctaacaaggtcaaaaatcttaatcaccttcccaatatatcccatatgtttaat |
41905476 |
T |
|
| Q |
311 |
ggagtcgttgttttcccggcacatttaaaatgctgtttttcaaccaaaagcatctaaaatcacagtgacggtcattgcaaacagcatctgcagtgacaac |
410 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41905477 |
ggtgtcgttgttttcccggcacatttaaaatgctgtttttcaaccaaaagcatctaaaatcacagtgacggtcattgcaaacagcatctgcagtgacaac |
41905576 |
T |
|
| Q |
411 |
ctaaattgctgctgtgataactgaaatttgtacttgtatggcctgtacaatcagtgcattcattctaaatatagttgccttaaaaatcctatttacaaat |
510 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41905577 |
ctaaattgctgctgtgataactgacatttgtacttgtatggcctgtacaatcagtgcattcattctaaatatagttgccttaaaaatcctatttacaaat |
41905676 |
T |
|
| Q |
511 |
aaaacatatgctaccaattcctaaatacaagatatgcatgattgcaagataggagcctagt |
571 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
41905677 |
aaaacatatgctaccaattcctaaatacaagatatgcatgattgcaagatatgagcctagt |
41905737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 28143918 - 28143810
Alignment:
| Q |
11 |
agtttggtgttttggataaaatggtaatttgaaggaaatctgacggctatgcaagttataactcattcgcggggatagcacgaagttttaactcgtacac |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||| ||||||||||| |||||| |||||| ||||| ||||| ||| |
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| T |
28143918 |
agtttggtgttttggataaaatggtaatttgaaggaaatccgacgactatacaagttacaactcattcgcagggataacacgaaattttatctcgtgcac |
28143819 |
T |
|
| Q |
111 |
tttaacatt |
119 |
Q |
| |
|
|||| |||| |
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|
| T |
28143818 |
tttagcatt |
28143810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 26494260 - 26494375
Alignment:
| Q |
11 |
agtttggtgttttggataaaatggtaatttgaaggaaatctgacggctatgcaagttataactcattcgcggggatagcacgaagttttaactcgtacac |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||| | |||||||||||||| ||||||| || ||||| ||||| || |
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| T |
26494260 |
agtttggtgttttggattaaatggtaatttgaaagaaatctgatggctatgcaagtaacaactcattcgcgggtatagcacaaaattttatctcgtgcaa |
26494359 |
T |
|
| Q |
111 |
tttaacattattcttt |
126 |
Q |
| |
|
|||| |||| |||||| |
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|
| T |
26494360 |
tttagcatttttcttt |
26494375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 22744229 - 22744115
Alignment:
| Q |
11 |
agtttggtgttttggataaaatggtaatttgaaggaaatctgacggctatgcaagttataactcattcgcggggatagcacgaagttttaactcgtacac |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||| | | |||||||||||| |||||||||| ||||| ||||| || |
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|
| T |
22744229 |
agtttggtgttttggattaaatggtaatttgaaagaaatctgatggctatgcaagtaacagctcattcgcgggtatagcacgaaattttatctcgtgcaa |
22744130 |
T |
|
| Q |
111 |
tttaacattattctt |
125 |
Q |
| |
|
|||| |||| ||||| |
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|
| T |
22744129 |
tttagcatttttctt |
22744115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 27695415 - 27695307
Alignment:
| Q |
11 |
agtttggtgttttggataaaatggtaatttgaaggaaatctgacggctatgcaagttataactcattcgcggggatagcacgaagttttaactcgtacac |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||| | |||||||||||| | | |||||||||||| |||||||||| ||||| ||||| || |
|
|
| T |
27695415 |
agtttggtgttttggattaaatggtaatttgaaagaaatctaatggctatgcaagtaacagctcattcgcgggtatagcacgaaattttatctcgtgcaa |
27695316 |
T |
|
| Q |
111 |
tttaacatt |
119 |
Q |
| |
|
|||| |||| |
|
|
| T |
27695315 |
tttagcatt |
27695307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 38760559 - 38760484
Alignment:
| Q |
172 |
attctcctatttatacacgatactctcaaactaatcaattaacaaactcttccataacccatatcctaacaaacta |
247 |
Q |
| |
|
||||||||||||||||| | |||||| ||||||||||||||| ||||| || || | || |||||||||||||| |
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|
| T |
38760559 |
attctcctatttatacatgctactctataactaatcaattaactaactcctctttatctcacatcctaacaaacta |
38760484 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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