View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7377_low_3 (Length: 452)

Name: NF7377_low_3
Description: NF7377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7377_low_3
NF7377_low_3
[»] chr8 (11 HSPs)
chr8 (19-228)||(23770920-23771129)
chr8 (35-228)||(5019427-5019624)
chr8 (51-138)||(23771082-23771169)
chr8 (384-443)||(5004202-5004261)
chr8 (19-118)||(5004813-5004909)
chr8 (22-132)||(5004938-5005049)
chr8 (384-443)||(5019212-5019271)
chr8 (55-138)||(5019593-5019673)
chr8 (64-138)||(5004865-5004936)
chr8 (55-101)||(5019799-5019845)
chr8 (94-138)||(5005005-5005049)
[»] scaffold0275 (10 HSPs)
scaffold0275 (51-228)||(20941-21118)
scaffold0275 (19-105)||(11629-11715)
scaffold0275 (382-444)||(21272-21334)
scaffold0275 (384-443)||(12367-12426)
scaffold0275 (55-138)||(11593-11676)
scaffold0275 (384-443)||(6730-6789)
scaffold0275 (19-120)||(6098-6193)
scaffold0275 (284-317)||(21174-21207)
scaffold0275 (62-138)||(6069-6142)
scaffold0275 (62-120)||(11790-11848)


Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 23771129 - 23770920
Alignment:
Q  19 aaattagtccttctagaatacaattatcttgaagctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23771129 aaattagtccttctagaatacaattatcttgaagctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctc 23771030  T
Q  119 ttttagccaacaacataagccacacacgaacacataaataactcactaacacataaatttcaaacctataattgagtacttcagtaactgctccaacatt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23771029 ttttagccaacaacataagccacacacgaacacataaataactcactaacacataaatttcaaacctataattgagtacttcagtaactgctccaacatt 23770930  T
Q  219 aataattgag 228  Q
    ||||||||||    
T  23770929 aataattgag 23770920  T

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Target: chr8; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 35 - 228
Target Start/End: Complemental strand, 5019624 - 5019427
Alignment:
Q  35 aatacaattatcttgaagctaacaacataagcaggtacacaataacaaacatgcataaattagtcc----ttctacaatacgattctcttttagccaaca 130  Q
    ||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    |||| |||||||||||||||||||||||||    
T  5019624 aatacaattctcttgtagctaacaatataagcaggtacacaataacaaacatgcataaattagtccaaccttctgcaatacgattctcttttagccaaca 5019525  T
Q  131 acataagccacacacgaacacataaataactcactaacacataaatttcaaacctataattgagtacttcagtaactgctccaacattaataattgag 228  Q
    |||||||| ||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5019524 acataagctacgtacgaacacataaataacccactaacacataaatttcaaacctataattgagtacttcaataactgctccaacattaataattgag 5019427  T

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Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 23771169 - 23771082
Alignment:
Q  51 agctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagc 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||  ||| ||||||||||||    
T  23771169 agctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctagaatacaattatcttgaagctaacaacataagc 23771082  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 384 - 443
Target Start/End: Complemental strand, 5004261 - 5004202
Alignment:
Q  384 cagctcctgggaccatatcagtaggcatagccgtaacagcctccaactcttccttcttct 443  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  5004261 cagctcctgggcccatatcagtaggcacagccgtatcagcctccaactcttccttcttct 5004202  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 5004909 - 5004813
Alignment:
Q  19 aaattagtccttctagaatacaattatcttgaagctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctc 118  Q
    |||||||||||||   ||||||||| ||||  ||| |||||||||||||||| ||| |||| ||||||||||| |||||| |||||||||||| ||||||    
T  5004909 aaattagtccttc---aatacaattctcttctagccaacaacataagcaggtccacgataataaacatgcatacattagttcttctacaatacaattctc 5004813  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 5005049 - 5004938
Alignment:
Q  22 ttagtccttctagaatacaattatcttgaagctaacaacataagcaggtacacaataacaaacatgcataaattagtccttct-acaatacgattctctt 120  Q
    |||||||||||  ||||||||| ||||  ||| |||||||||||||||| |||||||| || ||||||||||||||| ||||| | ||||| | ||||||    
T  5005049 ttagtccttctccaatacaattctcttatagccaacaacataagcaggtccacaataataatcatgcataaattagttcttctgaaaatacaaatctctt 5004950  T
Q  121 ttagccaacaac 132  Q
     ||| |||||||    
T  5004949 ctaggcaacaac 5004938  T

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Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 443
Target Start/End: Complemental strand, 5019271 - 5019212
Alignment:
Q  384 cagctcctgggaccatatcagtaggcatagccgtaacagcctccaactcttccttcttct 443  Q
    ||||||||||||||||||| ||||||| || | || ||||||||||||||||||||||||    
T  5019271 cagctcctgggaccatatcggtaggcaaagtcttatcagcctccaactcttccttcttct 5019212  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 138
Target Start/End: Complemental strand, 5019673 - 5019593
Alignment:
Q  55 aacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagc 138  Q
    ||||||||| ||||   ||||||||||||||||||||||||||||   ||||||||| |||||||| |||| ||||| ||||||    
T  5019673 aacaacatatgcagacccacaataacaaacatgcataaattagtc---ctacaatacaattctcttgtagctaacaatataagc 5019593  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 5004936 - 5004865
Alignment:
Q  64 agcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagc 138  Q
    |||||||  ||||||| || ||||||||||||||||||||   ||||| |||||||| |||||||||||||||||    
T  5004936 agcaggtcgacaataataagcatgcataaattagtccttc---aatacaattctcttctagccaacaacataagc 5004865  T

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Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 5019845 - 5019799
Alignment:
Q  55 aacaacataagcaggtacacaataacaaacatgcataaattagtcct 101  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||    
T  5019845 aacaacataagcagacccacaataacaaacatgcataaattagtcct 5019799  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 5005049 - 5005005
Alignment:
Q  94 ttagtccttctacaatacgattctcttttagccaacaacataagc 138  Q
    ||||||||||| |||||| |||||||| |||||||||||||||||    
T  5005049 ttagtccttctccaatacaattctcttatagccaacaacataagc 5005005  T

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Target: scaffold0275 (Bit Score: 174; Significance: 2e-93; HSPs: 10)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 51 - 228
Target Start/End: Original strand, 20941 - 21118
Alignment:
Q  51 agctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagccacacacgaaca 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20941 agctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagccacacacgaaca 21040  T
Q  151 cataaataactcactaacacataaatttcaaacctataattgagtacttcagtaactgctccaacattaataattgag 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21041 cataaataactcactaacacataaatttcaaacctataattgagtacttcagtaactgctccaacattaataactgag 21118  T

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Target: scaffold0275; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 11629 - 11715
Alignment:
Q  19 aaattagtccttctagaatacaattatcttgaagctaacaacataagcaggtacacaataacaaacatgcataaattagtccttcta 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11629 aaattagtccttctagaatacaattatcttgaagctaacaacataagcaggtacacaataacaaacatgcataaattagtccttcta 11715  T

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Target: scaffold0275; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 382 - 444
Target Start/End: Original strand, 21272 - 21334
Alignment:
Q  382 aacagctcctgggaccatatcagtaggcatagccgtaacagcctccaactcttccttcttctc 444  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21272 aacagctcctgggaccatatcagtaggcatagccctaacagcctccaactcttccttcttctc 21334  T

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Target: scaffold0275; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 384 - 443
Target Start/End: Original strand, 12367 - 12426
Alignment:
Q  384 cagctcctgggaccatatcagtaggcatagccgtaacagcctccaactcttccttcttct 443  Q
    |||||||| |||||||||||||||||| ||||||| |||||||| |||||||||||||||    
T  12367 cagctcctcggaccatatcagtaggcaaagccgtatcagcctccgactcttccttcttct 12426  T

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Target: scaffold0275; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 138
Target Start/End: Original strand, 11593 - 11676
Alignment:
Q  55 aacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagc 138  Q
    ||||||||||||||   |||| |||| |||||||||||||||||||||||| ||||| ||| ||||  ||| ||||||||||||    
T  11593 aacaacataagcagacccacagtaacgaacatgcataaattagtccttctagaatacaattatcttgaagctaacaacataagc 11676  T

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Target: scaffold0275; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 443
Target Start/End: Original strand, 6730 - 6789
Alignment:
Q  384 cagctcctgggaccatatcagtaggcatagccgtaacagcctccaactcttccttcttct 443  Q
    |||||||| |||||||||||||||||| |||| || |||| ||| |||||||||||||||    
T  6730 cagctcctcggaccatatcagtaggcaaagccctatcagcttccgactcttccttcttct 6789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 6098 - 6193
Alignment:
Q  19 aaattagtccttctagaatacaattatcttgaagctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctc 118  Q
    |||||||||||||   |||||| || ||||  ||| ||||||| |||||||| |||||||| ||||||||||| |||||   ||||||||||| ||||||    
T  6098 aaattagtccttc---aatacagttctcttatagccaacaacacaagcaggtccacaataataaacatgcatacattag---ttctacaatacaattctc 6191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 317
Target Start/End: Original strand, 21174 - 21207
Alignment:
Q  284 cttgagccggtatcagcagccacagccctatcag 317  Q
    ||||||||||||||||||||||||||||||||||    
T  21174 cttgagccggtatcagcagccacagccctatcag 21207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 6069 - 6142
Alignment:
Q  62 taagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagc 138  Q
    |||||||||  ||||||| || |||||||||||||||||||   ||||||  ||||||| |||||||||||| ||||    
T  6069 taagcaggtcgacaataataagcatgcataaattagtcctt---caatacagttctcttatagccaacaacacaagc 6142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 11790 - 11848
Alignment:
Q  62 taagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctctt 120  Q
    |||||||||  ||||||| || |||||||| |||||||||||||| |||| ||||||||    
T  11790 taagcaggtcgacaataataagcatgcatatattagtccttctacgatacaattctctt 11848  T

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