View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7377_low_5 (Length: 372)

Name: NF7377_low_5
Description: NF7377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7377_low_5
NF7377_low_5
[»] chr1 (3 HSPs)
chr1 (19-363)||(33768852-33769190)
chr1 (18-297)||(33764052-33764331)
chr1 (40-298)||(33772193-33772451)
[»] chr4 (3 HSPs)
chr4 (40-194)||(41238474-41238628)
chr4 (18-136)||(49465214-49465332)
chr4 (18-129)||(8349193-8349304)
[»] chr8 (5 HSPs)
chr8 (28-152)||(25224812-25224936)
chr8 (28-154)||(26168446-26168572)
chr8 (18-128)||(26396047-26396157)
chr8 (18-132)||(1093113-1093227)
chr8 (38-128)||(15688402-15688492)
[»] chr7 (4 HSPs)
chr7 (18-162)||(29462849-29462993)
chr7 (18-130)||(19844604-19844716)
chr7 (43-136)||(19890486-19890579)
chr7 (31-67)||(19877567-19877603)
[»] chr2 (2 HSPs)
chr2 (40-98)||(28642196-28642254)
chr2 (38-98)||(28691399-28691459)


Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 363
Target Start/End: Complemental strand, 33769190 - 33768852
Alignment:
Q  19 attcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtggaatccgtaggtttc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  33769190 attcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggtattccggttattgttttggatgagatgattagtggaatccgtaggtttc 33769091  T
Q  119 atgaacaagatgctgatgcaaggaaaccattttatacaagggatacaagtaagaaagttcgatatttctctaatggtagcctttttaaggaccctgctgc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33769090 atgaacaagatgctgatgcaaggaaaccattttatacaagggataaaagtaagaaagttcgatatttctctaatggtagcctttttacggaccctgctgc 33768991  T
Q  219 caactggagggactcaatttcattttttgtaagtcccaatcctcccgatccagaagaaataccgcaagtatccaggtaattaatgttcattttaattttt 318  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    |||||||| ||||| |||||    
T  33768990 caactggagggactcactttcattttttgtaagtcccaatcctcccgatccagaagaaataccgcaagtatgcagg----taatgttcgttttatttttt 33768895  T
Q  319 ggatcgggcaaagttatgtcacttagagagtactacaagtattat 363  Q
    | |||| |||||||||||||||||  |||||||||||||||||||    
T  33768894 gtatcgtgcaaagttatgtcactt--agagtactacaagtattat 33768852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 33764331 - 33764052
Alignment:
Q  18 aattcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtggaatccgtaggttt 117  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| | |||||||||||||    
T  33764331 aattcgtagtgcatgcaaggagtggggatttttccaagtgattaatcatggtattccggttagtgttttggatgagatgactagcgcaatccgtaggttt 33764232  T
Q  118 catgaacaagatgctgatgcaaggaaaccattttatacaagggatacaagtaagaaagttcgatatttctctaatggtagcctttttaaggaccctgctg 217  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||| |||||||| |||||||||||    
T  33764231 catgaacaagaagttgatgcaaggaaaccattttatacaagggatacaagtaagaaagtcagatatttttctaatggtaccctttttagggaccctgctg 33764132  T
Q  218 ccaactggagggactcaatttcattttttgtaagtcccaatcctcccgatccagaagaaataccgcaagtatccaggtaa 297  Q
    | |||||||||||| ||||| ||||||||   |||||  |||||||  |||||||||||||||| ||||||| |||||||    
T  33764131 ctaactggagggacacaattgcattttttactagtcctgatcctcctaatccagaagaaataccacaagtatgcaggtaa 33764052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 40 - 298
Target Start/End: Complemental strand, 33772451 - 33772193
Alignment:
Q  40 tggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtggaatccgtaggtttcatgaacaagatgctgatgcaa 139  Q
    ||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| || || | ||    
T  33772451 tggggatgttttcaagtgattaatcatggtattccagatagcgttttggatgagatgattagtggaatccgtaggtttcatgaacaagaagccgaggaaa 33772352  T
Q  140 ggaaaccattttatacaagggatacaagtaagaaagttcgatatttctctaatggtagcctttttaaggaccctgctgccaactggagggactcaatttc 239  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||| ||| |||||| |||||||||||| |||||||    
T  33772351 ggaaaccattctatacaagggatacaagtaagaaagttagatatttctccaatggaagcctttttaagaaccatgctgctaactggagggacacaatttc 33772252  T
Q  240 attttttgtaagtcccaatcctcccgatccagaagaaataccgcaagtatccaggtaat 298  Q
     |||| |||||||||  |||||||  |||||||||||||||| ||||||| ||||||||    
T  33772251 tttttatgtaagtcctgatcctcctaatccagaagaaatacctcaagtatgcaggtaat 33772193  T

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Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 40 - 194
Target Start/End: Original strand, 41238474 - 41238628
Alignment:
Q  40 tggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtggaatccgtaggtttcatgaacaagatgctgatgcaa 139  Q
    ||||||||||| |||||||| ||||||||||||||| ||  |||||||||||||||||| | ||||||  |||| |||||||||||||||||||| || |    
T  41238474 tggggatttttccaagtgatcaatcatggtattccacttcatgttttggatgagatgatcaatggaatttgtagatttcatgaacaagatgctgaagcta 41238573  T
Q  140 ggaaaccattttatacaagggatacaagtaagaaagttcgatatttctctaatgg 194  Q
     |||||| |||||  |||| |||| |  |||||||||| | ||||||||||||||    
T  41238574 agaaacccttttactcaagagataaagataagaaagttaggtatttctctaatgg 41238628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 49465332 - 49465214
Alignment:
Q  18 aattcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtggaatccgtaggttt 117  Q
    |||||||||||||||| | ||||||||||||||||| |||||||||||||  |||||  |||  || |||||||| ||||||  |||||||||||| |||    
T  49465332 aattcgaagtgcatgccatgagtggggattttttcaggtgattaatcatgaaattcccattaccgtcttggatgaaatgattgatggaatccgtagcttt 49465233  T
Q  118 catgaacaagatgctgatg 136  Q
    |||||||||||||||||||    
T  49465232 catgaacaagatgctgatg 49465214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 8349193 - 8349304
Alignment:
Q  18 aattcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtggaatccgtaggttt 117  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||  ||| ||| |||||||| |  |||  |||||| |||||||||    
T  8349193 aattcgaactgcatgcaaggagtggggattttttaaagtgattaatcatggaattcccattaatgtattggatgaaacaattgatggaattcgtaggttt 8349292  T
Q  118 catgaacaagat 129  Q
    ||||||||||||    
T  8349293 catgaacaagat 8349304  T

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Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 28 - 152
Target Start/End: Complemental strand, 25224936 - 25224812
Alignment:
Q  28 gcatgcaaggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtggaatccgtaggtttcatgaacaag 127  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||| ||| ||| |||||||| |  |||| |||||| |||||||||||||||||||    
T  25224936 gcatgcaaggagtagggattttttcaagtgattaatcatggaattccaattaatgtattggatgaaacaattaatggaattcgtaggtttcatgaacaag 25224837  T
Q  128 atgctgatgcaaggaaaccatttta 152  Q
    || |||| | ||| |||| ||||||    
T  25224836 atcctgaagtaagaaaacaatttta 25224812  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 28 - 154
Target Start/End: Original strand, 26168446 - 26168572
Alignment:
Q  28 gcatgcaaggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtggaatccgtaggtttcatgaacaag 127  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||  ||  ||| |||||||| |  |||  |||||| |||||||||||||||||||    
T  26168446 gcatgcaaggagtggggattttttcaagtgattaatcatggaattcccattgatgtattggatgaaacaattgatggaattcgtaggtttcatgaacaag 26168545  T
Q  128 atgctgatgcaaggaaaccattttata 154  Q
    || | || | |||||||| ||||||||    
T  26168546 atcccgaagtaaggaaacaattttata 26168572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 26396047 - 26396157
Alignment:
Q  18 aattcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtggaatccgtaggttt 117  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||  |||||  || |||| |||||||| ||| ||  |||| | |||||||||    
T  26396047 aattcgaactgcatgtaaggagtggggattttttcaagtgattaatcatgaaattcccatttgtgtattggatgaaatgcttgatggatttcgtaggttt 26396146  T
Q  118 catgaacaaga 128  Q
    |||||||||||    
T  26396147 catgaacaaga 26396157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 1093113 - 1093227
Alignment:
Q  18 aattcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtggaatccgtaggttt 117  Q
    ||||| |||||||||| | |||||||||||||||||  | ||||||||||  |||||  ||| ||| |||||||| ||||||  ||||||  ||| ||||    
T  1093113 aattcaaagtgcatgccatgagtggggattttttcagataattaatcatgaaattcccattaatgtcttggatgaaatgattgatggaattagtaagttt 1093212  T
Q  118 catgaacaagatgct 132  Q
    || ||||||||||||    
T  1093213 cacgaacaagatgct 1093227  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 15688492 - 15688402
Alignment:
Q  38 agtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtggaatccgtaggtttcatgaacaaga 128  Q
    |||||||||| ||||||||| | || ||||||||||||  || |||||||||||| ||||||  |||| |   ||| ||||||||||||||    
T  15688492 agtggggattctttcaagtggtcaaccatggtattccatctactgttttggatgaaatgattgatggagtggttagatttcatgaacaaga 15688402  T

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Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 29462849 - 29462993
Alignment:
Q  18 aattcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtggaatccgtaggttt 117  Q
    |||||||||||||||| | ||||||||||||||||| |||||||||||||  |||||  ||| ||| |||||||| ||||||  ||||||| ||||||||    
T  29462849 aattcgaagtgcatgccatgagtggggattttttcaggtgattaatcatgaaattcctattattgtcttggatgaaatgattgatggaatctgtaggttt 29462948  T
Q  118 catgaacaagatgctgatgcaaggaaaccattttatacaagggat 162  Q
    |||||||||||||| |||| ||| |||   ||||||||| |||||    
T  29462949 catgaacaagatgccgatgtaagaaaagagttttatacacgggat 29462993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 19844604 - 19844716
Alignment:
Q  18 aattcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtggaatccgtaggttt 117  Q
    |||||||||||||||  | ||||||||||||||||| |||||||||||||  |||||  | | ||| |||||||||||||||  |||||||||||  |||    
T  19844604 aattcgaagtgcatgtcatgagtggggattttttcaggtgattaatcatgaaattcccatcaatgtattggatgagatgattcatggaatccgtaacttt 19844703  T
Q  118 catgaacaagatg 130  Q
    |||||||||||||    
T  19844704 catgaacaagatg 19844716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 19890486 - 19890579
Alignment:
Q  43 ggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtggaatccgtaggtttcatgaacaagatgctgatg 136  Q
    ||||||||||| || |||||||||| ||||||  ||  ||| |||||||| ||||||  |||||||||||| |||||||||||||||| |||||    
T  19890486 ggattttttcaggtaattaatcatgatattcccattgatgtcttggatgaaatgattcatggaatccgtagttttcatgaacaagatgttgatg 19890579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 19877603 - 19877567
Alignment:
Q  31 tgcaaggagtggggattttttcaagtgattaatcatg 67  Q
    ||||| |||||||||||||||||||||||||||||||    
T  19877603 tgcaatgagtggggattttttcaagtgattaatcatg 19877567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 28642254 - 28642196
Alignment:
Q  40 tggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgat 98  Q
    |||||||| |||||||| || |||||||| |||||||||  ||||||||||||||||||    
T  28642254 tggggattctttcaagtaataaatcatggaattccagttcatgttttggatgagatgat 28642196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 28691459 - 28691399
Alignment:
Q  38 agtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgat 98  Q
    |||||||||| |||||||| || |||||||| ||| ||| |  ||||||||||||||||||    
T  28691459 agtggggattctttcaagtaataaatcatggaatttcagctcatgttttggatgagatgat 28691399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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