View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7377_low_6 (Length: 372)
Name: NF7377_low_6
Description: NF7377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7377_low_6 |
 | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 42258651 - 42258320
Alignment:
| Q |
19 |
aaaaatgctagctcttgattcagttttatgtggtagtagttgttcaataacacgactgcatgcacctacaccataatcatataattaaatacttgtggtt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42258651 |
aaaaatgctagctcttgattcagttttatgtggtagtagttgttcaataacacgactgcatgcacctacgccataatcatataattaaatacttgtggtt |
42258552 |
T |
|
| Q |
119 |
cttcaacttttaaatcaaataggaactttaattagatgttaattaatctttggattgccatatctactaggaactttaagtagatgttaaaatcatgaac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42258551 |
cttcaacttttaaatcaaataggaactttaattagatgttaattaatctttggattgccatatctactaggaactttaagtagatgttaaaatcatgaac |
42258452 |
T |
|
| Q |
219 |
ttcaattagatannnnnnnngacaaatatgaacttcaattagatattaaaatcaaataagaacttcaatttgatgttaactaatctttcaattttaaaat |
318 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42258451 |
ttcaattagatattttttttgacaaatatgaacttcaattagatattaaaatcaaataagaacttcaatttgatgttaactaatctttcaattttaaaat |
42258352 |
T |
|
| Q |
319 |
caaatgagaacattttttaaaatattggcact |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
42258351 |
caaatgagaacattttttaaaatattggcact |
42258320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 42253088 - 42252877
Alignment:
| Q |
19 |
aaaaatgctagctcttgattcagttttatgtggtagtagttgttcaataacacgactgcatgcacctacaccataatcatataattaaatacttgtggtt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
42253088 |
aaaaatgctagctcttgattcagttttatgtggtagtagttgttcaataacacgactgcatgcacctacaccataatcatataattaaatacttgtggat |
42252989 |
T |
|
| Q |
119 |
cttcaacttttaaatcaaataggaactttaattagatgttaattaatctttggattgccatatctactaggaactttaagtagatgttaaaatcatgaac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
42252988 |
cttcaacttttaaatcaaataggaacttcaattagatgttaattaatctttggattgccatatctaataggaaccttaagtagatgttaaaatcatgaac |
42252889 |
T |
|
| Q |
219 |
ttcaattagata |
230 |
Q |
| |
|
|||||||||||| |
|
|
| T |
42252888 |
ttcaattagata |
42252877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 42279216 - 42278997
Alignment:
| Q |
19 |
aaaaatgctagctcttgattcagtttt---atgtggtagtagttgttcaataacacgactgc------atgcacctacaccataatcatataattaaata |
109 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||| ||||| |
|
|
| T |
42279216 |
aaaaatgctagctcttgattcatttttctgatgtggtagtagttgttcaataacacgactgcgactgcacgcacctacatcataatcatataatgaaata |
42279117 |
T |
|
| Q |
110 |
cttgtggttcttcaacttttaaatcaaataggaactttaattagatgttaattaatctttggattgccatatctactaggaactttaagtagatgttaaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
42279116 |
cttgtggttcttcaacttttaaatcaaataggaacttcaattagatgttaattaatctttggattgccatatctaataggaactttaa-tagatgttaaa |
42279018 |
T |
|
| Q |
210 |
atcatgaacttcaattagata |
230 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
42279017 |
atcatgaacttcaattagata |
42278997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 24 - 214
Target Start/End: Complemental strand, 42271469 - 42271278
Alignment:
| Q |
24 |
tgctagctcttgattcagttttatgtggtagtagttgttcaataacacgactgcatgcacctacaccataatcatataattaaatacttgtggttcttca |
123 |
Q |
| |
|
|||||||||||||||||||||| ||||| || |||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42271469 |
tgctagctcttgattcagttttttgtggcagcagttcttcaataagacgactagatgcacctacaccataatcatataattaaatacttgtggttcttca |
42271370 |
T |
|
| Q |
124 |
acttttaaatcaaataggaac--tttaattagatgttaattaatctttggattgccatatctactaggaactttaagtagatgttaaaatcat |
214 |
Q |
| |
|
||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||| |
|
|
| T |
42271369 |
actttaaaatcaaataggaacaattcaattagatgttaattaatctttggattgccatatctaataggaactct-agtagatattaaaatcat |
42271278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 42267183 - 42266975
Alignment:
| Q |
19 |
aaaaatgctagctcttgattcagttttatgtggtagtagttgttcaataacacgactgcatgcacctacaccataatcatataattaaatacttgtggtt |
118 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
42267183 |
aaaaatgctagctcttgattcagttttctgtggtagtagttgttcaataacgcgactgaatgcacctacaccataatcatataattaa--actt-tggtt |
42267087 |
T |
|
| Q |
119 |
cttcaacttttaaatcaaatagga-actttaattagatgttaattaatctttggattgccatatctactaggaactttaagtagatgttaaaatcatgaa |
217 |
Q |
| |
|
||||| | || ||| ||||||||| | || ||||||||||||||||||||||||||||||||||||| | ||||||| | ||||||| |||||||| ||| |
|
|
| T |
42267086 |
cttcatcattaaaaccaaataggataattcaattagatgttaattaatctttggattgccatatctaattggaacttcatgtagatg-taaaatcaggaa |
42266988 |
T |
|
| Q |
218 |
cttcaattagata |
230 |
Q |
| |
|
||||||||||||| |
|
|
| T |
42266987 |
cttcaattagata |
42266975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 42284504 - 42284333
Alignment:
| Q |
24 |
tgctagctcttgattcagttttatgtggtagtagttgttcaataacacgactgcatgcacctacaccataatcatataattaaatacttgtggttcttca |
123 |
Q |
| |
|
|||||||||||||||||||||| ||||| || |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42284504 |
tgctagctcttgattcagttttttgtggcagcagttcttcaataacacgactagatgcacctacaccataatcatataattaaatacttctggttcttca |
42284405 |
T |
|
| Q |
124 |
acttttaaatcaaataggaac--tttaattagatgttaattaatctttggattgccatatctactaggaact |
193 |
Q |
| |
|
||||| |||||||| |||||| || ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42284404 |
actttaaaatcaaacaggaacaattcaattagatgttaattaatctttggattgccatatctaataggaact |
42284333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 246 - 350
Target Start/End: Complemental strand, 42252894 - 42252790
Alignment:
| Q |
246 |
atgaacttcaattagatattaaaatcaaataagaacttcaatttgatgttaactaatctttcaattttaaaatcaaatgagaacattttttaaaatattg |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42252894 |
atgaacttcaattagatattaaaatcaaataagaacttcaatttcatgttaactaatctttcaattttaaaatcaaatgagaacattttttaaaatattg |
42252795 |
T |
|
| Q |
346 |
gcact |
350 |
Q |
| |
|
||||| |
|
|
| T |
42252794 |
gcact |
42252790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 246 - 348
Target Start/End: Complemental strand, 42279014 - 42278912
Alignment:
| Q |
246 |
atgaacttcaattagatattaaaatcaaataagaacttcaatttgatgttaactaatctttcaattttaaaatcaaatgagaacattttttaaaatattg |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||| | ||||||||||||| |
|
|
| T |
42279014 |
atgaacttcaattagatattaaaatcaaataagaacttcaatttcatgttaactaatctttcaaatttaaaatcaaatgggaacttcttttaaaatattg |
42278915 |
T |
|
| Q |
346 |
gca |
348 |
Q |
| |
|
||| |
|
|
| T |
42278914 |
gca |
42278912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 248 - 348
Target Start/End: Complemental strand, 42266990 - 42266891
Alignment:
| Q |
248 |
gaacttcaattagatattaaaatcaaataagaacttcaatttgatgttaactaatctttcaattttaaaatcaaatgagaacattttttaaaatattggc |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42266990 |
gaacttcaattagatattaaaatcaaataagattttcaatttgatgttaattaatctttcaattttaaaatcaaatgagaa-tttttttaaaatattggc |
42266892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 7692069 - 7691994
Alignment:
| Q |
19 |
aaaaatgctagctcttgattcagttttatgtggtagtagttgttcaataacacgactgcatgcacctacaccataa |
94 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
7692069 |
aaaaatgctagctcttgattcagttttgtgtggtagtagttgttcaataacacgactgcacgcacctacatcataa |
7691994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 42306677 - 42306546
Alignment:
| Q |
21 |
aaatgctagctcttgattcagttttatgtggtagtagttgttcaataacacgactgcatgcacctacaccataatcatataattaaatacttgtggttct |
120 |
Q |
| |
|
|||| |||||||| ||||| ||||| ||||||| ||||||| || |||||| || ||||||||||||||||||||||| || | |||||| ||||||| |
|
|
| T |
42306677 |
aaattctagctctggattctgttttctgtggtaatagttgtacagtaacacaacagcatgcacctacaccataatcatgcaacttaatactaatggttct |
42306578 |
T |
|
| Q |
121 |
tcaacttttaaatcaaataggaactttaatta |
152 |
Q |
| |
|
| |||||| ||||||||||||||||| ||||| |
|
|
| T |
42306577 |
tgaactttaaaatcaaataggaacttcaatta |
42306546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 42284279 - 42284227
Alignment:
| Q |
276 |
aagaacttcaatttgatgttaactaatctttcaattttaaaatcaaatgagaa |
328 |
Q |
| |
|
|||||||| ||||||||||||| |||| |||||||||| |||||||||||||| |
|
|
| T |
42284279 |
aagaacttaaatttgatgttaattaatatttcaattttgaaatcaaatgagaa |
42284227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 42284326 - 42284294
Alignment:
| Q |
260 |
gatattaaaatcaaataagaacttcaatttgat |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
42284326 |
gatattaaaatcaaataagaacttcaatttgat |
42284294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 12463818 - 12463607
Alignment:
| Q |
19 |
aaaaatgctagctcttgattcagttttatgtggtagtagttgttcaataacacgactgcatgcacctacaccataatcatataattaaatacttgtggtt |
118 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||| | |
|
|
| T |
12463818 |
aaaaatgctagctcttgattcagttttttgtggtagtagttgttcaataacacgactgcacgcacctacatcataatcatataatgaaatacttgtggat |
12463719 |
T |
|
| Q |
119 |
cttcaacttttaaatcaaataggaactttaattagatgttaattaatctttggattgccatatctactaggaactttaagtagatgttaaaatcatgaac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
12463718 |
cttcaacttttaaatcaaataggaacttcaattagatgttaattaatctttggattgccatatctaatagttactttaagtagatgttaaaatcatgaac |
12463619 |
T |
|
| Q |
219 |
ttcaattagata |
230 |
Q |
| |
|
| |||||||||| |
|
|
| T |
12463618 |
tccaattagata |
12463607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 246 - 349
Target Start/End: Complemental strand, 12463624 - 12463522
Alignment:
| Q |
246 |
atgaacttcaattagatattaaaatcaaataagaacttcaatttgatgttaactaatctttcaattttaaaatcaaatgagaacattttttaaaatattg |
345 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
12463624 |
atgaactccaattagatattaaaatcaaataagaacttcaatttgatgttaactaatctttcaattttaaaatcaaatgagaa-tttttttacaatattg |
12463526 |
T |
|
| Q |
346 |
gcac |
349 |
Q |
| |
|
|||| |
|
|
| T |
12463525 |
gcac |
12463522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 487486 - 487267
Alignment:
| Q |
19 |
aaaaatgctagctcttgattcagtttt---atgtggtagtagttgttcaataacacgactgc------atgcacctacaccataatcatataattaaata |
109 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||| ||||| |
|
|
| T |
487486 |
aaaaatgctagctcttgattcatttttctgatgtggtagtagttgttcaataacacgactgcgactgcacgcacctacatcataatcatataatgaaata |
487387 |
T |
|
| Q |
110 |
cttgtggttcttcaacttttaaatcaaataggaactttaattagatgttaattaatctttggattgccatatctactaggaactttaagtagatgttaaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
487386 |
cttgtggttcttcaacttttaaatcaaataggaacttcaattagatgttaattaatctttggattgccatatctaataggaactttaa-tagatgttaaa |
487288 |
T |
|
| Q |
210 |
atcatgaacttcaattagata |
230 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
487287 |
atcatgaacttcaattagata |
487267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 246 - 348
Target Start/End: Complemental strand, 487284 - 487182
Alignment:
| Q |
246 |
atgaacttcaattagatattaaaatcaaataagaacttcaatttgatgttaactaatctttcaattttaaaatcaaatgagaacattttttaaaatattg |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||| | ||||||||||||| |
|
|
| T |
487284 |
atgaacttcaattagatattaaaatcaaataagaacttcaatttcatgttaactaatctttcaaatttaaaatcaaatgggaacttcttttaaaatattg |
487185 |
T |
|
| Q |
346 |
gca |
348 |
Q |
| |
|
||| |
|
|
| T |
487184 |
gca |
487182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 30713272 - 30713360
Alignment:
| Q |
22 |
aatgctagctcttgattcagttttatgtggtagtagttgttcaataacacgactgcatgcacctacaccataatcatataattaaatac |
110 |
Q |
| |
|
|||||||| | |||||||| |||| |||||||||| |||||||||||||||||| ||||| ||||| |||||||| || ||||||||| |
|
|
| T |
30713272 |
aatgctaggttttgattcaattttctgtggtagtaattgttcaataacacgactttatgcatctacatcataatcagattattaaatac |
30713360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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