View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7377_low_8 (Length: 342)
Name: NF7377_low_8
Description: NF7377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7377_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 15 - 321
Target Start/End: Original strand, 29238542 - 29238848
Alignment:
| Q |
15 |
cagcagcaaacccatagaaatcggttataagtttaccaatttcgacaatctgttcgaagacatggttagggatagggttaagaagcatctcaatgttaat |
114 |
Q |
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| T |
29238542 |
cagcagcaaacccatagaaatcggttataagtttaccaatttcgacaatctgttcgaagacatggttagggatagggttaagaagcatctcaatgttaat |
29238641 |
T |
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| Q |
115 |
cttcttgtcatagtaattaacaacatcatttttgagaatttcaagtatcttatcagccacgaatctgacagtactgagcggctgaccggcaagaggctga |
214 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29238642 |
cttcttgtcatagtaattaacagcatcatttttgagaatttcaagtatcttatcagccacgaatctgacagtactgagcggctgaccggcaagaggctga |
29238741 |
T |
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| Q |
215 |
ccagggcgtggctgctggataagagtgagcagattgttgtaggccgcgcgggttttgttacttttaggttggtagaggccgtcgtcgacgaccgggaaga |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29238742 |
ccagggcgtggctgctggataagagtgagcagattgttgtaggccgcgcgggttttgttagttttaggttggtagaggccgtcgtcgacgaccgggaaga |
29238841 |
T |
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| Q |
315 |
cgaactt |
321 |
Q |
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||||||| |
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| T |
29238842 |
cgaactt |
29238848 |
T |
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