View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7378_low_1 (Length: 626)
Name: NF7378_low_1
Description: NF7378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7378_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 381
Target Start/End: Original strand, 37436862 - 37437226
Alignment:
| Q |
8 |
attattcttttagtagaaacacagtgtgaaaattttctttaatgttgttgtttgtctgctaaattatgtattgtataggttggagcgaataaacccagat |
107 |
Q |
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| T |
37436862 |
attattcttttaggagaaacacagtgtgaaaattttctttaatgttgttgtttgtttgctaaattatgtattgtataggttggagcgaataaacccagat |
37436961 |
T |
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| Q |
108 |
tgccctgttactaccttgccacaatgtaagcccactgataactgcctcgctaaggttataaaggtctcacgtgcttagctaatttcaaagacatttgttt |
207 |
Q |
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| T |
37436962 |
tgccctgttactaccttgccacaatgtaagcccactgataactgcctcgctaaggttataaaggtctcacgtgcttagctaatttcaaagacatttgttt |
37437061 |
T |
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| Q |
208 |
tataaatctgcggttgcttctcttatatatgttccaactggaatcatgaatttttctagtttattgttgtttttagtttgcttgttacttactgtcatgt |
307 |
Q |
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| T |
37437062 |
tataaatctgcggttgcttctct----tatgttccaactggaatcatgaatttttctag-ttattgttgtttttagtttgcttg----ttactgtcatgt |
37437152 |
T |
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| Q |
308 |
gttcagaaaaagcaaatgataataaacttgtaatgggggatgatgagaatcactccacgtcttgatggatattg |
381 |
Q |
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| T |
37437153 |
gttcagaaaaagcaaatgataataaacttgtaatgggggatgatgagaatcactccacgtcttgatggatattg |
37437226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 383 - 614
Target Start/End: Original strand, 37437258 - 37437489
Alignment:
| Q |
383 |
tggttatttatttcaatgaagcttaatttgttaccataagtctatacccagaccttgctgaccacaattcctctgctaccttcactttgaaagtagttat |
482 |
Q |
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| T |
37437258 |
tggttatttatttcaatgaagcttaatttgttaccataagtctatacccagaccttgctgaccacaattcctctgctaccttcactttgaaagtagttat |
37437357 |
T |
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| Q |
483 |
gtctttggaacgttgcacgataattcccacacaccataatagcagaaaaccacgattattattccatctttgtgtataactttttaacaacaagaatatt |
582 |
Q |
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| T |
37437358 |
gtctttggaacgttgcacgagaattcccacacaccataatagcagaaaaccacgattattattccatctttgtgtataactttttaacaacaagaatatt |
37437457 |
T |
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| Q |
583 |
ttgaaagataacaaaattggttcatgttaatg |
614 |
Q |
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| T |
37437458 |
ttgaaagataacaaaattggttcatgttaatg |
37437489 |
T |
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