View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7378_low_5 (Length: 332)
Name: NF7378_low_5
Description: NF7378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7378_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 6 - 332
Target Start/End: Complemental strand, 41497889 - 41497563
Alignment:
| Q |
6 |
gtatattattctcttaacgctctcaaagttgagctccgtgtatattttttgtgtgtgcttagacacatgttagactcttattattttagtcgactagtta |
105 |
Q |
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| T |
41497889 |
gtatattattctcttaacgctctcaaagttgagctccgtgtatattttttgtgtgtgcttagacacatgttagactcttattattttagtcgactagtta |
41497790 |
T |
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| Q |
106 |
aacaaactaattggataatacttttactctaccttgggggagaagattcgctgcaaaattgtaaggaaaggttaagccatgagatttataacctaggtga |
205 |
Q |
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| T |
41497789 |
aacaaactaattggataatacttttactctaccttgggggagaagattcactccaaaattgtaaggaaaggttaagccatgagatttataacctaggtga |
41497690 |
T |
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| Q |
206 |
gtcttagaatttggtttgaacttaactcaacacttcactctcgtaccaatttaaaatttgtgtcgagttaaactcaacccttacaaaatcagggtgcaag |
305 |
Q |
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||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41497689 |
gtcttagaatttggtttgaacttaattcaacccttcactttcgtaccaatttaaaatttgtgtcgagttagactcaacccttacaaaatcagggtgcaag |
41497590 |
T |
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| Q |
306 |
aaaatacggtacacgagtaactaatcc |
332 |
Q |
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| T |
41497589 |
aaaatacggcacacgagtatctaatcc |
41497563 |
T |
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