View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7378_low_9 (Length: 247)
Name: NF7378_low_9
Description: NF7378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7378_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 29233069 - 29233306
Alignment:
| Q |
1 |
aataacaaactacggtaacaaagccacgataatcataaacaagaaattcaaccctcttctagtctcaaagggatacacacaccaacaatttgatcagtac |
100 |
Q |
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| T |
29233069 |
aataacaaactacggtaacaaagccacgataatcataaacaagaaattcaaccctcttctagtctctaagggatacacacaccaacaatttgatcagtac |
29233168 |
T |
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| Q |
101 |
atatagtccttaacatgaagactctctgatgcaccagcaccaagtttagagttacccttgtaagttccaagagtagcctcagaattagccttggcccttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29233169 |
ttatagtccttaacatgaagactctctgatgcaccagcaccaagtttagagttacccttgtaagttccaagagtagcctcagaattagccttggcccttg |
29233268 |
T |
|
| Q |
201 |
tcaacaaagcttcttgtgcagccttcacattttcttct |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
29233269 |
tcaacaaagcttcttgtgcagccttcacattttcttct |
29233306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 104 - 238
Target Start/End: Original strand, 29236922 - 29237056
Alignment:
| Q |
104 |
tagtccttaacatgaagactctctgatgcaccagcaccaagtttagagttacccttgtaagttccaagagtagcctcagaattagccttggcccttgtca |
203 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
29236922 |
tagtccttaacatgaagactctctgaggcaccagcaccaagtttggagttacccttgtaagttccaagagtagcctcagagttagccttagcccttgtca |
29237021 |
T |
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| Q |
204 |
acaaagcttcttgtgcagccttcacattttcttct |
238 |
Q |
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| T |
29237022 |
acaaagcttcttgtgcagccttcacattttcttct |
29237056 |
T |
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