View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7379_low_1 (Length: 632)

Name: NF7379_low_1
Description: NF7379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7379_low_1
NF7379_low_1
[»] chr3 (9 HSPs)
chr3 (155-461)||(44355243-44355550)
chr3 (480-613)||(44355579-44355712)
chr3 (15-124)||(19647621-19647730)
chr3 (15-125)||(7944218-7944328)
chr3 (15-125)||(40916566-40916675)
chr3 (19-117)||(26251277-26251374)
chr3 (28-118)||(34020547-34020637)
chr3 (72-118)||(45525835-45525881)
chr3 (19-117)||(49015471-49015568)
[»] chr5 (7 HSPs)
chr5 (15-123)||(14136398-14136506)
chr5 (15-124)||(11782160-11782269)
chr5 (15-124)||(27514203-27514311)
chr5 (18-115)||(1463734-1463831)
chr5 (15-124)||(38695021-38695131)
chr5 (15-104)||(40323389-40323478)
chr5 (19-100)||(32772381-32772461)
[»] chr1 (11 HSPs)
chr1 (15-124)||(38863428-38863537)
chr1 (15-124)||(37285456-37285564)
chr1 (19-125)||(26733426-26733531)
chr1 (15-117)||(14998509-14998610)
chr1 (45-116)||(47215499-47215570)
chr1 (28-118)||(50150066-50150156)
chr1 (19-118)||(43011612-43011711)
chr1 (19-118)||(46879059-46879157)
chr1 (19-118)||(29922445-29922543)
chr1 (71-117)||(5056041-5056087)
chr1 (20-117)||(6850152-6850248)
[»] chr8 (6 HSPs)
chr8 (15-123)||(31664815-31664923)
chr8 (22-118)||(42146062-42146158)
chr8 (15-121)||(27562591-27562698)
chr8 (15-122)||(35176339-35176446)
chr8 (15-118)||(30152399-30152502)
chr8 (19-117)||(9232826-9232923)
[»] chr6 (6 HSPs)
chr6 (15-116)||(18058399-18058500)
chr6 (15-124)||(30452797-30452906)
chr6 (15-118)||(7695181-7695284)
chr6 (19-117)||(27335454-27335551)
chr6 (19-117)||(27396194-27396291)
chr6 (40-118)||(25049495-25049573)
[»] chr4 (14 HSPs)
chr4 (15-124)||(33748232-33748341)
chr4 (15-126)||(42057894-42058005)
chr4 (15-124)||(54453862-54453971)
chr4 (19-116)||(48513460-48513556)
chr4 (19-117)||(31416525-31416622)
chr4 (19-99)||(37385828-37385907)
chr4 (19-115)||(52488655-52488750)
chr4 (15-54)||(1605942-1605981)
chr4 (19-118)||(42478213-42478311)
chr4 (19-115)||(29820243-29820338)
chr4 (70-118)||(55862514-55862561)
chr4 (70-117)||(34456143-34456190)
chr4 (20-94)||(49251394-49251468)
chr4 (28-97)||(38582173-38582242)
[»] scaffold0060 (1 HSPs)
scaffold0060 (15-125)||(60556-60666)
[»] chr7 (4 HSPs)
chr7 (15-125)||(27923264-27923373)
chr7 (15-124)||(42062089-42062198)
chr7 (19-117)||(42010691-42010788)
chr7 (15-63)||(38231098-38231146)
[»] chr2 (7 HSPs)
chr2 (15-125)||(7000443-7000552)
chr2 (22-108)||(42481211-42481296)
chr2 (19-118)||(14360106-14360204)
chr2 (15-118)||(11761899-11762000)
chr2 (70-118)||(17033824-17033872)
chr2 (70-118)||(17077554-17077602)
chr2 (70-118)||(17088508-17088556)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 155 - 461
Target Start/End: Original strand, 44355243 - 44355550
Alignment:
Q  155 ttacataacaaaattgtgtcacggtgtgctttaatttttcaatatgaacggggtatctctgcgcgtaattagatagaccgatctctcaagagatttcatc 254  Q
    |||||||| ||||||||| | ||||||||||| ||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44355243 ttacataataaaattgtgccgcggtgtgctttgatttttcaatacgaacgaggtatctctgtgcgtaattagatagaccgatctctcaagagatttcatc 44355342  T
Q  255 ttaataaatttcttttactaatccctagctgtgtagttggattacaaagaataaatcaggtcctttctttg-aaaaatatagagtaatagattcaccaat 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||| ||||||||||||||||| ||| ||||      
T  44355343 ttaataaatttcttttactaatccctagctgtgtagttggattacagagaataaaccatgtcctttctttgaaaaaatatagagtaataaatttaccagg 44355442  T
Q  354 attgcataaacatctctataatcgaattcaagacatctcattaagtcgaaagagatctcatcaaaatgttattggatttgggatgtgctatgattggatg 453  Q
    |||||||||| |||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44355443 attgcataaatatctctataatcaaattaaagacatctcattaagccgaaagagatctcatcaaaatgttattggatttgggatgtgctttgattggatg 44355542  T
Q  454 cacatttt 461  Q
    ||||||||    
T  44355543 cacatttt 44355550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 480 - 613
Target Start/End: Original strand, 44355579 - 44355712
Alignment:
Q  480 gtattacttataagaagagaacaagagaggtcaaatgagattcttttgcccaataataaacaaccatatcttgtcaggtaggtagatctaaacagtattt 579  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  44355579 gtattacatataagaagagaacaagagaggtcaaatgagattctttggcccaataataaacaaccatatcttgccaggtaggtagatctaaacattattt 44355678  T
Q  580 ggattacaaagaatcaatccggatctgcataggt 613  Q
    |||||||||||||||||||||||||| |||||||    
T  44355679 ggattacaaagaatcaatccggatctacataggt 44355712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 19647730 - 19647621
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19647730 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatggtacaaaaatttggtccatcatggaccaatatttttataggttcatttt 19647631  T
Q  115 atacttcacc 124  Q
    ||||||||||    
T  19647630 atacttcacc 19647621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 7944328 - 7944218
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 114  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7944328 tttgatgtttatagaccatgataaaatttggtggattcatatgatctaatggtacaaaaaattggtccatcatgaaccaatatttttataggttcatttt 7944229  T
Q  115 atacttcacct 125  Q
    |||||||||||    
T  7944228 atacttcacct 7944218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 40916675 - 40916566
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 114  Q
    |||| |||||||||||||| |||||||||| ||||||| ||||||||||| ||||||||||||| ||||  ||  | ||||| ||||||||||| |||||    
T  40916675 tttgatgtttatagaccataataaaatttgatgggttcttatgatctaatggtacaaaaaattgatccacaataaaacaata-ttttataggtttatttt 40916577  T
Q  115 atacttcacct 125  Q
    |||||||||||    
T  40916576 atacttcacct 40916566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 26251277 - 26251374
Alignment:
Q  19 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttata 117  Q
    ||||||||||| ||||||||||||| | |||||||| | ||||||  ||  ||||||||| ||||||||||||||||||| | || |||||||||||||    
T  26251277 gtgtttatagatcatgataaaattttg-gggttcatttaatctaaccgttgaaaaaattgatccatcatggaccaatattctcatgggttcattttata 26251374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 118
Target Start/End: Complemental strand, 34020637 - 34020547
Alignment:
Q  28 gaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttatac 118  Q
    |||||| ||||| |||||||||||||||||||  ||| |||||||||| ||||||||  |  ||||||||||| | | |||||||||||||    
T  34020637 gaccataataaagtttggtgggttcatatgattcaatggtacaaaaaactggtccattttaaaccaatattttcacatgttcattttatac 34020547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 45525881 - 45525835
Alignment:
Q  72 aaaattggtccatcatggaccaatatttttataggttcattttatac 118  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||    
T  45525881 aaaattggtccatgatggaccaatatttttatgggttcattttatac 45525835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 49015568 - 49015471
Alignment:
Q  19 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttata 117  Q
    ||||||||||| ||||||||||||| | || ||||| | ||||||  ||  |||||||||||||||||| |||||||||| | | || |||||||||||    
T  49015568 gtgtttatagatcatgataaaattttgagg-ttcatttaatctaaccgttgaaaaaattggtccatcatagaccaatattctcagagattcattttata 49015471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 1e-49; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 14136398 - 14136506
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14136398 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 14136497  T
Q  115 atacttcac 123  Q
    |||||||||    
T  14136498 atacttcac 14136506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 11782160 - 11782269
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 114  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11782160 tttgatgtttatagaccatgataaaatttggtgggttcatatgatctaacggtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 11782259  T
Q  115 atacttcacc 124  Q
    ||||||||||    
T  11782260 atacttcacc 11782269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 27514203 - 27514311
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27514203 tttggtgtttatagaccatgataaaatttggtgggttcatatgatcta-tggtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 27514301  T
Q  115 atacttcacc 124  Q
    ||||||||||    
T  27514302 atacttcacc 27514311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 1463734 - 1463831
Alignment:
Q  18 ggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttta 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  1463734 ggtgtttatagatcatgataaaatttggtgggttcatatgatctaatgatatcaaaaattggtccatcatggaccaatatttttataggttcatttta 1463831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 38695021 - 38695131
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcat-ggaccaatatttttataggttcattt 113  Q
    ||||||||||||| |||||||||||||||| | ||||||||||||||||| |||||||||||||||| |||||   | ||||||||||||||||||||||    
T  38695021 tttggtgtttataaaccatgataaaatttgataggttcatatgatctaatggtacaaaaaattggtctatcataaaaacaatatttttataggttcattt 38695120  T
Q  114 tatacttcacc 124  Q
    |||||||||||    
T  38695121 tatacttcacc 38695131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 40323389 - 40323478
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttata 104  Q
    |||| ||||||||||||||||||| |||||||| |||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  40323389 tttgatgtttatagaccatgataagatttggtgagttcatataatctaatggtacaaaaaattggtccatcatagaccaatatttttata 40323478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 32772381 - 32772461
Alignment:
Q  19 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttt 100  Q
    ||||||||||| ||||||||||||| | |||||||| | ||||||  ||  |||||||||||||||||| ||||||||||||    
T  32772381 gtgtttatagatcatgataaaattttg-gggttcatctaatctaaccgttgaaaaaattggtccatcatagaccaatatttt 32772461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 6e-48; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 38863537 - 38863428
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 114  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38863537 tttggtgtttatagaccatgataaaatttggtggattcatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 38863438  T
Q  115 atacttcacc 124  Q
    ||||||||||    
T  38863437 atacttcacc 38863428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 37285564 - 37285456
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 114  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||||||||||||||||||||||||| |||||||||    
T  37285564 tttggtgtttatagaccatgataaaatttggtggattcatatgatctaatgataccaaaaattggtccatcatggaccaatatttttata-gttcatttt 37285466  T
Q  115 atacttcacc 124  Q
    ||||||||||    
T  37285465 atacttcacc 37285456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 26733426 - 26733531
Alignment:
Q  19 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttatac 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||| |||||||||||||||| ||||||||||||     
T  26733426 gtgtttatagaccatgataaaatttggtgggttcatataatctaatggtac-aaaaattggtccatcatagaccaatatttttataagttcattttatag 26733524  T
Q  119 ttcacct 125  Q
    |||||||    
T  26733525 ttcacct 26733531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 14998610 - 14998509
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 114  Q
    ||||||||||| ||| |||||||| ||||| | |||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14998610 tttggtgtttaaagatcatgataagatttg-taggtttatatgatctaacggtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 14998512  T
Q  115 ata 117  Q
    |||    
T  14998511 ata 14998509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 47215570 - 47215499
Alignment:
Q  45 gtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttat 116  Q
    |||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47215570 gtgggttcatattatttaatggtacaaaaaattggtccatcatggaccaatatttttataggttcattttat 47215499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 28 - 118
Target Start/End: Complemental strand, 50150156 - 50150066
Alignment:
Q  28 gaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttatac 118  Q
    |||||| |||| ||||||||||||||||||||||||  |||||||||| ||||||||| | |||||||||||| | |||||||||||||||    
T  50150156 gaccataataagatttggtgggttcatatgatctaacggtacaaaaaactggtccatcttagaccaatattttcacaggttcattttatac 50150066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 43011711 - 43011612
Alignment:
Q  19 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttatac 118  Q
    |||||||  |||||| ||||  |||||||||||||||||||| ||  |||||||||| ||||||||| | |||||||||||||  |||||||||||||||    
T  43011711 gtgtttaatgaccataataaggtttggtgggttcatatgatccaacggtacaaaaaactggtccatcttagaccaatatttttccaggttcattttatac 43011612  T

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Target: chr1; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 46879157 - 46879059
Alignment:
Q  19 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttatac 118  Q
    ||||||||||||||||||||||||| | || ||||||| ||||||   |  |||||||| |||||||||||||||||||||| || ||||||||||||||    
T  46879157 gtgtttatagaccatgataaaatttag-ggattcatataatctaaccattgaaaaaattagtccatcatggaccaatattttcatgggttcattttatac 46879059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 29922445 - 29922543
Alignment:
Q  19 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttatac 118  Q
    |||||||||||||||||||||||||   |||||||||| ||||||   |  ||||||||||||||||||| ||||||||||  || | ||||||||||||    
T  29922445 gtgtttatagaccatgataaaatttaa-gggttcatataatctaaccattgaaaaaattggtccatcatgaaccaatatttccatggattcattttatac 29922543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 5056041 - 5056087
Alignment:
Q  71 aaaaattggtccatcatggaccaatatttttataggttcattttata 117  Q
    |||||||||||||||||||||||||||||| || |||||||||||||    
T  5056041 aaaaattggtccatcatggaccaatattttcatgggttcattttata 5056087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 6850248 - 6850152
Alignment:
Q  20 tgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttata 117  Q
    |||||||||| ||||||||||||| | ||| |||| | ||||||  ||  ||||||||| ||||||||||||||||||| | || |||||||||||||    
T  6850248 tgtttatagatcatgataaaattttg-gggctcatctaatctaaccgttgaaaaaattgatccatcatggaccaatattctcatgggttcattttata 6850152  T

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Target: chr8 (Bit Score: 97; Significance: 2e-47; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 31664815 - 31664923
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 114  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31664815 tttggtgtttatagaccatgataaaatttggtgagttcatatgatctaatggtacaaaaaattgttccatcatggaccaatatttttataggttcatttt 31664914  T
Q  115 atacttcac 123  Q
    |||||||||    
T  31664915 atacttcac 31664923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 42146158 - 42146062
Alignment:
Q  22 tttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttatac 118  Q
    |||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42146158 tttataaaccacgataaaatttggtgggttcatatgatctaatggtacaaaaaattggtccatcatggaccaatatttttataggttcattttatac 42146062  T

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Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 27562591 - 27562698
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtac-aaaaaattggtccatcatggaccaatatttttataggttcattt 113  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||| |||||||||||||||||||||||||    
T  27562591 tttgatgtttatagaccatgataaaatttggtgggttcatatgatctaatggtacaaaaaaattagtccatcatagaccaatatttttataggttcattt 27562690  T
Q  114 tatacttc 121  Q
    ||||||||    
T  27562691 tatacttc 27562698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 35176446 - 35176339
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 114  Q
    |||||||||||| ||||||||||||||||||||| ||||||| ||||||| | | |||||||| ||||||||| |||||||||||||||||||| |||||    
T  35176446 tttggtgtttatggaccatgataaaatttggtggattcatataatctaatgggataaaaaattagtccatcatagaccaatatttttataggttgatttt 35176347  T
Q  115 atacttca 122  Q
    ||||||||    
T  35176346 atacttca 35176339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 30152399 - 30152502
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 114  Q
    |||||||||||| ||||||| ||| |||| ||||||| |||| ||||||   |  |||| ||||||||||||||||||||||| || || ||||||||||    
T  30152399 tttggtgtttatggaccatggtaagatttagtgggttgatataatctaaacattgaaaagattggtccatcatggaccaatatcttgatgggttcatttt 30152498  T
Q  115 atac 118  Q
    ||||    
T  30152499 atac 30152502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 9232923 - 9232826
Alignment:
Q  19 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttata 117  Q
    ||||||||||| ||||||||||||| | |||||||| | ||||||  ||  ||||||||| ||||||||||| ||||||| | || |||||||||||||    
T  9232923 gtgtttatagatcatgataaaattttg-gggttcatctaatctaaccgttgaaaaaattgatccatcatggatcaatattctcatgggttcattttata 9232826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 18058500 - 18058399
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 114  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18058500 tttggtgtttatagaccatgataaaatttggtggattcatatgatctaatggtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 18058401  T
Q  115 at 116  Q
    ||    
T  18058400 at 18058399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 30452797 - 30452906
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 114  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| |||||    
T  30452797 tttggtgtttatagaccatgataaaatttaatgggttcatatgatctaatggtacaaaaaattggtccatcatagaccaatattattataggtttatttt 30452896  T
Q  115 atacttcacc 124  Q
    ||||||||||    
T  30452897 atacttcacc 30452906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 7695181 - 7695284
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 114  Q
    |||||||||||| ||||||||||| |||| ||||||| |||||||||||   |  |||| | ||||||||||| ||||||||| || || ||||||||||    
T  7695181 tttggtgtttatggaccatgataagatttagtgggttgatatgatctaagcattgaaaagactggtccatcatcgaccaatatcttgatgggttcatttt 7695280  T
Q  115 atac 118  Q
    ||||    
T  7695281 atac 7695284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 27335551 - 27335454
Alignment:
Q  19 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttata 117  Q
    ||||||||||| ||||||||||||| | |||||||| | ||||||   |  ||||||||||||||||||||||||||||| | || |||||||||||||    
T  27335551 gtgtttatagatcatgataaaattttg-gggttcatctaatctaactattgaaaaaattggtccatcatggaccaatattctcatgggttcattttata 27335454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 27396291 - 27396194
Alignment:
Q  19 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttata 117  Q
    ||||||||||| ||||||||||||| | |||||||| | ||||||   |  ||||||||||||||||||||||||||||| | || |||||||||||||    
T  27396291 gtgtttatagatcatgataaaattttg-gggttcatctaatctaactattgaaaaaattggtccatcatggaccaatattctcatgggttcattttata 27396194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 25049573 - 25049495
Alignment:
Q  40 atttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttatac 118  Q
    ||||||||||||||||||||| ||  ||| ||||||||||||||||||  |||||||||||  |  |||||||||||||    
T  25049573 atttggtgggttcatatgatccaacggtagaaaaaattggtccatcataaaccaatattttcgtgcgttcattttatac 25049495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 4e-43; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 33748232 - 33748341
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 114  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33748232 tttgatgtttatagaccatgataaaatttgatggattcatatgatctaatggtacaaaaaattggtccatcatgaaccaatatttttataggttcatttt 33748331  T
Q  115 atacttcacc 124  Q
    ||||||||||    
T  33748332 atacttcacc 33748341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 42057894 - 42058005
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 114  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||    
T  42057894 tttggtgtttataaaccatgataaaatttggtgggttcttatgatctaatggtacaaaaaattggtccatcataaaccaatatttttataggttcatttt 42057993  T
Q  115 atacttcacctc 126  Q
     |||||||||||    
T  42057994 gtacttcacctc 42058005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 54453971 - 54453862
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 114  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  54453971 tttggtatttatagaccatgataaaatttgatgggttcatatgatctaatggtacaaaaaattgatccatcataaaccaatatttttataggttcatttt 54453872  T
Q  115 atacttcacc 124  Q
    ||||||||||    
T  54453871 atacttcacc 54453862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 48513460 - 48513556
Alignment:
Q  19 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttat 116  Q
    ||||||||||| ||||||||||||| | |||||||| | ||||||  ||  ||||||||||||||||||||||||||||| | || ||||||||||||    
T  48513460 gtgtttatagatcatgataaaattttg-gggttcatctaatctaaccgttgaaaaaattggtccatcatggaccaatattctcatgggttcattttat 48513556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 31416622 - 31416525
Alignment:
Q  19 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttata 117  Q
    ||||||||||| ||||||||||||| | | |||||| | ||||||  ||  ||||||||||||||||||||||||||||| | || |||||||||||||    
T  31416622 gtgtttatagatcatgataaaattttg-gagttcatgtaatctaaccgttaaaaaaattggtccatcatggaccaatattctcatgggttcattttata 31416525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 37385828 - 37385907
Alignment:
Q  19 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatattt 99  Q
    ||||||||||||||||||||||||| | |||||||||| |||||||  |  |||||||||||| ||||| |||||||||||    
T  37385828 gtgtttatagaccatgataaaatttag-gggttcatataatctaatcattgaaaaaattggtctatcatagaccaatattt 37385907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 52488750 - 52488655
Alignment:
Q  19 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttta 115  Q
    ||||||||||| ||||||||||||| | |||||||| | ||||||  ||  |||||||||||||||| | |||||||||| | |||| |||||||||    
T  52488750 gtgtttatagatcatgataaaattttg-gggttcatctaatctaaccgttgaaaaaattggtccatcttagaccaatattctcatagattcatttta 52488655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 1605981 - 1605942
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcat 54  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  1605981 tttggtgtttatagatcatgataaaatttggtgggttcat 1605942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 42478213 - 42478311
Alignment:
Q  19 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttatac 118  Q
    |||| ||||||||||||||||||||   ||||| |||| |||||||  |  ||||||||| ||||||||| | ||||||||| || ||||||||||||||    
T  42478213 gtgtgtatagaccatgataaaatttaa-gggtttatataatctaatcattgaaaaaattgatccatcatgaatcaatattttcatgggttcattttatac 42478311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 29820243 - 29820338
Alignment:
Q  19 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttta 115  Q
    ||||||||||| ||||||||||||| | |||||||| | || |||  ||  ||||||||||||||||||  ||||||||| | || |||||||||||    
T  29820243 gtgtttatagatcatgataaaattttg-gggttcatctaatttaaccgttgaaaaaattggtccatcataaaccaatattctcatgggttcatttta 29820338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 55862561 - 55862514
Alignment:
Q  70 aaaaaattggtccatcatggaccaatatttttataggttcattttatac 118  Q
    ||||||||||||||||||||||||||||||| || ||||||| ||||||    
T  55862561 aaaaaattggtccatcatggaccaatattttgat-ggttcatattatac 55862514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 34456190 - 34456143
Alignment:
Q  70 aaaaaattggtccatcatggaccaatatttttataggttcattttata 117  Q
    |||||| ||||||| |||||||||||||||||| |||| |||||||||    
T  34456190 aaaaaagtggtccaacatggaccaatatttttagaggtccattttata 34456143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 49251394 - 49251468
Alignment:
Q  20 tgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaa 94  Q
    |||| |||||| ||||||||||||  |||| | || | ||||||| |||  ||||||||||||||||||||||||    
T  49251394 tgttgatagactatgataaaattttatgggataatctaatctaatggtaataaaaattggtccatcatggaccaa 49251468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 38582242 - 38582173
Alignment:
Q  28 gaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatat 97  Q
    ||||||||||| |||| ||||| | || | ||||||| ||   |||||||||||||||||||||||||||    
T  38582242 gaccatgataagattttgtgggataatctaatctaatggtgggaaaaattggtccatcatggaccaatat 38582173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 60666 - 60556
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 114  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||  ||||||||||||||||||||||    
T  60666 tttggtgtttatagacaatgataaaatttggtgggttcatataatctaatggtacaaaaaattggtccatcatagattaatatttttataggttcatttt 60567  T
Q  115 atacttcacct 125  Q
    |||||||||||    
T  60566 atacttcacct 60556  T

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Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 27923264 - 27923373
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 114  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||     
T  27923264 tttggtgtttataaaccatgataaaatttggtgggttcttatgatctaatggtac-aaaaattggtccatcatgaaccaatatttttataggttcattta 27923362  T
Q  115 atacttcacct 125  Q
    |||||| ||||    
T  27923363 atacttgacct 27923373  T

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Target: chr7; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 42062198 - 42062089
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 114  Q
    |||| |||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||| || |||||| ||||||||||||||||||||||||||    
T  42062198 tttgatgtttatagaccataataaaatttggtggattcatatgatctaatggtacaaaaaattagttcatcatagaccaatatttttataggttcatttt 42062099  T
Q  115 atacttcacc 124  Q
     |||||||||    
T  42062098 gtacttcacc 42062089  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 42010788 - 42010691
Alignment:
Q  19 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttata 117  Q
    ||||||||||| ||||||||||||| | |||||||| |  |||||  ||  ||||||||||||||||||||||||||||| | || |||||||||||||    
T  42010788 gtgtttatagatcatgataaaattttg-gggttcatctattctaaccgttgaaaaaattggtccatcatggaccaatattctcatgggttcattttata 42010691  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 38231146 - 38231098
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaa 63  Q
    |||||||| ||| ||||||||||| |||| ||||||| |||||||||||    
T  38231146 tttggtgtgtatggaccatgataagatttagtgggttgatatgatctaa 38231098  T

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Target: chr2 (Bit Score: 71; Significance: 8e-32; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 7000443 - 7000552
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 114  Q
    ||||||||||||||||||| |||||||||||| | ||||||| ||||||| |||||||||||||||||||||| |||||||||||| ||| ||||| |||    
T  7000443 tttggtgtttatagaccataataaaatttggtagattcatataatctaatggtacaaaaaattggtccatcatagaccaatattttcatatgttca-ttt 7000541  T
Q  115 atacttcacct 125  Q
    |||||||||||    
T  7000542 atacttcacct 7000552  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 42481296 - 42481211
Alignment:
Q  22 tttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggtt 108  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  42481296 tttatagaccatgataaaatttggtggattcatatgatctaatggta-aaaaaattggtccatcatggaccaatatttttataggtt 42481211  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 14360204 - 14360106
Alignment:
Q  19 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttatac 118  Q
    ||||||||||| |||| ||| |||| |||| ||||||| ||||||  ||  |||||||||||| || ||||||||||||||| || ||||||||||||||    
T  14360204 gtgtttatagatcatggtaagatttagtgg-ttcatataatctaaccgttgaaaaaattggtctatgatggaccaatattttcatgggttcattttatac 14360106  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 11762000 - 11761899
Alignment:
Q  15 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 114  Q
    ||||||||||||||| ||| |||| ||||| ||  || ||||||| ||| | || |||||||||||||||||||||||| |||||| |||| || ||| |    
T  11762000 tttggtgtttatagatcataataagatttgatg--tttatatgatgtaacattaaaaaaaattggtccatcatggaccattattttcatagcttgattct 11761903  T
Q  115 atac 118  Q
    ||||    
T  11761902 atac 11761899  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 17033824 - 17033872
Alignment:
Q  70 aaaaaattggtccatcatggaccaatatttttataggttcattttatac 118  Q
    |||||||||||||||||||||| ||| ||||||  ||||||||||||||    
T  17033824 aaaaaattggtccatcatggacaaatttttttagtggttcattttatac 17033872  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 17077554 - 17077602
Alignment:
Q  70 aaaaaattggtccatcatggaccaatatttttataggttcattttatac 118  Q
    |||||||||||||||||||||| ||| ||||||  ||||||||||||||    
T  17077554 aaaaaattggtccatcatggacaaatttttttagtggttcattttatac 17077602  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 17088508 - 17088556
Alignment:
Q  70 aaaaaattggtccatcatggaccaatatttttataggttcattttatac 118  Q
    |||||||||||||||||||||| ||| ||||||  ||||||||||||||    
T  17088508 aaaaaattggtccatcatggacaaatttttttagtggttcattttatac 17088556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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