View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7379_low_4 (Length: 229)

Name: NF7379_low_4
Description: NF7379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7379_low_4
NF7379_low_4
[»] chr6 (1 HSPs)
chr6 (1-223)||(18459709-18459932)
[»] chr3 (3 HSPs)
chr3 (1-214)||(6162002-6162216)
chr3 (50-220)||(54586518-54586689)
chr3 (100-223)||(52972390-52972513)
[»] chr2 (3 HSPs)
chr2 (44-220)||(9635545-9635722)
chr2 (1-223)||(38619314-38619536)
chr2 (42-208)||(17312488-17312654)
[»] chr7 (3 HSPs)
chr7 (1-223)||(41257304-41257526)
chr7 (89-223)||(19215685-19215819)
chr7 (33-219)||(15889269-15889456)
[»] chr5 (5 HSPs)
chr5 (89-223)||(13850662-13850796)
chr5 (1-220)||(38965714-38965934)
chr5 (42-223)||(34833843-34834024)
chr5 (1-223)||(25761307-25761529)
chr5 (136-223)||(20236122-20236209)
[»] chr8 (3 HSPs)
chr8 (1-220)||(23710480-23710700)
chr8 (1-223)||(9173677-9173899)
chr8 (89-195)||(754231-754337)
[»] chr1 (3 HSPs)
chr1 (1-223)||(50515401-50515623)
chr1 (44-219)||(44713048-44713223)
chr1 (1-125)||(45910454-45910578)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 18459932 - 18459709
Alignment:
Q  1 ttcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcat-ttttgactctgcttcgcactattttcagtcaaggttgttcctc 99  Q
    |||||||||||||||||| |||||| ||| | |||||||| ||||||||||||||| ||||||||||||||||||||  ||||||||| ||||||||||     
T  18459932 ttcatgcgttccggattttgaatttcggatagaaccagtgcagaaactgtgttcatcttttgactctgcttcgcactgctttcagtcatggttgttcctg 18459833  T
Q  100 ttgatgccccacatgatgatccacctcagaatgaacctcctattgtgttgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgt 199  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||    
T  18459832 ttgatgccccacatgatgatccaccttagaatgaacctcctattgtgttgacgcttcttttacttgaagatgcgcatgatgacggaaatgccaaatccgt 18459733  T
Q  200 gaatcccccaccaccaccaccaaa 223  Q
    ||||||||||||||||||||||||    
T  18459732 gaatcccccaccaccaccaccaaa 18459709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 6162216 - 6162002
Alignment:
Q  1 ttcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctc 99  Q
    ||||||||||| |||||||| |||  ||| |  ||||||| |||||||||||||||||| ||||||| ||||||||| |||||||||| ||||||||||     
T  6162216 ttcatgcgttctggatttcggattccggagagcaccagtgcagaaactgtgttcattttctgactctacttcgcactgttttcagtcatggttgttcctg 6162117  T
Q  100 ttgatgccccacatgatgatccacctcagaatgaacctcctattgtgttgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgt 199  Q
    ||||| ||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  6162116 ttgatcccctaaatgatgatccacctcagaatgaacctcctattgtgttgctgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccga 6162017  T
Q  200 gaatcccccaccacc 214  Q
    |||||||||||||||    
T  6162016 gaatcccccaccacc 6162002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 50 - 220
Target Start/End: Original strand, 54586518 - 54586689
Alignment:
Q  50 tgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgatgatccacctcagaatgaacctcctattgtgtt 148  Q
    |||||||||| ||||||||||||||| | |||||||| | |||||||||  ||||||||||| ||||||||||| || ||| ||||| || ||| |||||    
T  54586518 tgttcattttctgactctgcttcgcattgttttcagttatggttgttccggttgatgccccaaatgatgatccagctgagattgaacatcatatcgtgtt 54586617  T
Q  149 gccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaccacc 220  Q
    |||| |||||||||||||||||| |||| |||| |||||||||||||||| ||| |||||||||||||||||    
T  54586618 gccggttcttttacttgaagatgtgcataattcgggaaatgccaaatccgagaagcccccaccaccaccacc 54586689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 100 - 223
Target Start/End: Complemental strand, 52972513 - 52972390
Alignment:
Q  100 ttgatgccccacatgatgatccacctcagaatgaacctcctattgtgttgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgt 199  Q
    ||||||||||| ||| |||||||||| ||| ||||| ||||| ||||||| | |||||||||||||||||||||||||||||||| |||||||||||||     
T  52972513 ttgatgccccaaatgttgatccacctgagattgaacatcctaatgtgttgtctcttcttttacttgaagatgcgcatgattccggtaatgccaaatccga 52972414  T
Q  200 gaatcccccaccaccaccaccaaa 223  Q
    |||||||||| |||| ||||||||    
T  52972413 gaatcccccatcaccgccaccaaa 52972390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 44 - 220
Target Start/End: Original strand, 9635545 - 9635722
Alignment:
Q  44 aaactgtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgatgatccacctcagaatgaacctcctat 142  Q
    |||||||| ||||||| ||| ||||||||||||| |||||||| | |||||||||| ||||||||||| |||||||||||||| ||| ||| ||||||||    
T  9635545 aaactgtgctcattttctgagtctgcttcgcactgttttcagttatggttgttcctgttgatgccccaaatgatgatccacctgagattgatcctcctat 9635644  T
Q  143 tgtgttgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaccacc 220  Q
    |||||||||| |||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||    
T  9635645 tgtgttgccggttcttttacttgaagatgtgcatgattccgaaaatgccaaatccgagaatcccccaccaccaccacc 9635722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 38619314 - 38619536
Alignment:
Q  1 ttcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcattttt-gactctgcttcgcactattttcagtcaaggttgttcctc 99  Q
    ||||||||||  |||||||||| | | |||   ||||||  ||||||||||||||||||| |||| ||| | | ||| |||||||  | |||||||||      
T  38619314 ttcatgcgttatggatttcgaaatctagactgcaccagtacagaaactgtgttcattttttgactatgcct-gtactgttttcagatatggttgttccga 38619412  T
Q  100 ttgatgccccacatgatgatccacctcagaatgaacctcctattgtgttgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgt 199  Q
    |||||||| || ||| |||||||||| ||| ||||||||||| || |||||||||||||||||||||||| |||||||||||||| |||||||||||||     
T  38619413 ttgatgcctcaaatgttgatccacctgagattgaacctcctaatgcgttgccgcttcttttacttgaagacgcgcatgattccggtaatgccaaatccga 38619512  T
Q  200 gaatcccccaccaccaccaccaaa 223  Q
    ||||||||||||||||||||||||    
T  38619513 gaatcccccaccaccaccaccaaa 38619536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 42 - 208
Target Start/End: Complemental strand, 17312654 - 17312488
Alignment:
Q  42 agaaactgtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgatgatccacctcagaatgaacctcct 140  Q
    |||||||||||||||||| ||||| ||||| ||||| |||||||  | ||||||||   ||||||||||| ||| |||||||||| ||| ||||| ||||    
T  17312654 agaaactgtgttcattttctgactatgctt-gcactgttttcagatatggttgttctggttgatgccccaaatgttgatccacctgagattgaacatcct 17312556  T
Q  141 attgtgttgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatccccc 208  Q
    | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||    
T  17312555 aatgtgttgccgcttcttttacttgaagatgcgcatgattccggtaatgccaaatccgagaaaccccc 17312488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 41257526 - 41257304
Alignment:
Q  1 ttcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctc 99  Q
    ||||||||||| |||||||||| |  ||||   ||||||  |||||||||||| ||||| ||||| ||| | ||||| |||||||  | |||||||||      
T  41257526 ttcatgcgttctggatttcgaaatccggactgcaccagtacagaaactgtgtttattttctgactatgcct-gcactgttttcagatatggttgttccga 41257428  T
Q  100 ttgatgccccacatgatgatccacctcagaatgaacctcctattgtgttgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgt 199  Q
    ||||||||||| ||| |||||||||| ||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  41257427 ttgatgccccaaatgttgatccacctgagattgaacctcctaatgcgttgccgcttcttttacttgaagatgcgcatgattccggtaatgccaaatccga 41257328  T
Q  200 gaatcccccaccaccaccaccaaa 223  Q
    ||||||||||||||||||||||||    
T  41257327 gaatcccccaccaccaccaccaaa 41257304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 89 - 223
Target Start/End: Original strand, 19215685 - 19215819
Alignment:
Q  89 ggttgttcctcttgatgccccacatgatgatccacctcagaatgaacctcctattgtgttgccgcttcttttacttgaagatgcgcatgattccggaaat 188  Q
    |||||||||  ||||||||||| ||| |||||||||| ||| |||||||| || ||  |||||||||||||||||||||||||||||||||||||| |||    
T  19215685 ggttgttccggttgatgccccaaatgttgatccacctgagactgaacctcttaatgcattgccgcttcttttacttgaagatgcgcatgattccggtaat 19215784  T
Q  189 gccaaatccgtgaatcccccaccaccaccaccaaa 223  Q
    |||||||||| ||||||||||||||||||||||||    
T  19215785 gccaaatccgagaatcccccaccaccaccaccaaa 19215819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 33 - 219
Target Start/End: Original strand, 15889269 - 15889456
Alignment:
Q  33 aaccagtgtagaaactgtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgatgatccacctcagaat 131  Q
    |||||||  ||||||| |||||||||| |||||  |||| ||||| |||||||| | |||||||||  ||||||||||| ||||||||||| || ||| |    
T  15889269 aaccagtacagaaactatgttcattttctgactaagcttggcactgttttcagttatggttgttccggttgatgccccaaatgatgatccagctgagatt 15889368  T
Q  132 gaacctcctattgtgttgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaccac 219  Q
    |||| |||||| |  |||| | |||||||||||||||||| |||||||||  ||| | |||||| || |||||||||||||| |||||    
T  15889369 gaacatcctatcgctttgctggttcttttacttgaagatgtgcatgattcttgaatttccaaattcgagaatcccccaccactaccac 15889456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 89 - 223
Target Start/End: Complemental strand, 13850796 - 13850662
Alignment:
Q  89 ggttgttcctcttgatgccccacatgatgatccacctcagaatgaacctcctattgtgttgccgcttcttttacttgaagatgcgcatgattccggaaat 188  Q
    |||||||||  ||||||||||| ||| |||||||||| ||| | ||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||    
T  13850796 ggttgttccagttgatgccccaaatgttgatccacctgagatttaacctcctaatgtgttgccgcttcttttacttgaagatgcgcatgatttcggtaat 13850697  T
Q  189 gccaaatccgtgaatcccccaccaccaccaccaaa 223  Q
    |||||||||| ||||||||||||||||||||||||    
T  13850696 gccaaatccgagaatcccccaccaccaccaccaaa 13850662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 38965714 - 38965934
Alignment:
Q  1 ttcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctc 99  Q
    ||||||| ||| |||||||||| |  |||| | ||||||  |||||||||||||||||| ||||| ||||| |||||  ||||| | | |||||||||      
T  38965714 ttcatgcattctggatttcgaaatccggactacaccagtacagaaactgtgttcattttctgactatgcttggcactgatttcaattatggttgttccgg 38965813  T
Q  100 ttgatgccccacatgatgatccacctcagaatgaacctcctattgtgttgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgt 199  Q
    ||||||||||| ||||||||||| || ||| ||||| ||||||  |||||||| |||||||||||||||||| |||||||||| ||| |||||||||||     
T  38965814 ttgatgccccaaatgatgatccagctgagattgaacatcctatcatgttgccggttcttttacttgaagatgtgcatgattccagaattgccaaatccga 38965913  T
Q  200 gaatcccccaccaccaccacc 220  Q
    ||||||||||| |||||||||    
T  38965914 gaatcccccactaccaccacc 38965934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 42 - 223
Target Start/End: Complemental strand, 34834024 - 34833843
Alignment:
Q  42 agaaactgtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgatgatccacctcagaatgaacctcct 140  Q
    |||||||||||||||||| ||||| | | | ||||| |||||||  | |||||||||  ||||||||||| ||  ||||| |||| ||| ||||||||||    
T  34834024 agaaactgtgttcattttctgactatacat-gcactgttttcagatatggttgttccgattgatgccccaaattttgatctacctaagattgaacctcct 34833926  T
Q  141 attgtgttgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaccaccaaa 223  Q
    | || ||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  34833925 aatgcgttgctgcttcttttacttgaagatgcgcatgattccggtaatgccaaatccgagaatcccccaccaccaccaccaaa 34833843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 25761307 - 25761529
Alignment:
Q  1 ttcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctc 99  Q
    ||||||||||||||| |||||| |  ||||   ||||||  | |||||||||||||||| ||||| ||| | ||||| |||||||  | |||||||||      
T  25761307 ttcatgcgttccggagttcgaaatccggactgcaccagtacaaaaactgtgttcattttctgactatgcct-gcactgttttcagatatggttgttccgg 25761405  T
Q  100 ttgatgccccacatgatgatccacctcagaatgaacctcctattgtgttgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgt 199  Q
    ||||||||||| ||| |||||||||| ||| ||||||||||| || ||| |||||||||||||||||||||||||||| |||||| ||||||||||| |     
T  25761406 ttgatgccccaaatgttgatccacctgagattgaacctcctaatgcgtttccgcttcttttacttgaagatgcgcatggttccggtaatgccaaatctga 25761505  T
Q  200 gaatcccccaccaccaccaccaaa 223  Q
    | ||||||||||||||| ||||||    
T  25761506 gtatcccccaccaccacgaccaaa 25761529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 136 - 223
Target Start/End: Complemental strand, 20236209 - 20236122
Alignment:
Q  136 ctcctattgtgttgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaccaccaaa 223  Q
    |||||| ||||| || |||||||||||||||||||||| || ||||||| |||||||||| || |||||||||||||||| |||||||    
T  20236209 ctcctaatgtgtcgcggcttcttttacttgaagatgcgtattattccggtaatgccaaatacgagaatcccccaccaccatcaccaaa 20236122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 23710700 - 23710480
Alignment:
Q  1 ttcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctc 99  Q
    |||||||||||||||||||||||| | |||   ||||||  | ||||| |||||||||| ||||| ||| |  |||| |||| ||  | ||||||| |      
T  23710700 ttcatgcgttccggatttcgaattctagactgcaccagtacataaactatgttcattttctgactatgcatgacactgtttttagatatggttgtttcgg 23710601  T
Q  100 ttgatgccccacatgatgatccacctcagaatgaacctcctattgtgttgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgt 199  Q
    ||||||||||| |||||||||||||| | | |||||||| |||| ||||||||||||||||||||||||||| | |||||||||| ||||||||||| |     
T  23710600 ttgatgccccaaatgatgatccacctgaaattgaacctcatattatgttgccgcttcttttacttgaagatgtgtatgattccgggaatgccaaatctga 23710501  T
Q  200 gaatcccccaccaccaccacc 220  Q
    |||||||||||||| ||||||    
T  23710500 gaatcccccaccactaccacc 23710480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 9173899 - 9173677
Alignment:
Q  1 ttcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctc 99  Q
    ||||||||||||||||||| || |   |||   ||||||  ||||||| |||||||||| ||||| ||| | ||||| |||||||  | ||||| |||      
T  9173899 ttcatgcgttccggatttcaaaatccagactgcaccagtacagaaactatgttcattttctgactatgcct-gcactgttttcagatatggttgctccgg 9173801  T
Q  100 ttgatgccccacatgatgatccacctcagaatgaacctcctattgtgttgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgt 199  Q
    |||||  |||| ||| |||||||||| ||| ||||| ||||| ||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||     
T  9173800 ttgatatcccaaatgttgatccacctgagattgaacatcctaatgtgttgccacttcttttacttgaagatacgcatgattccggtaatgccaaatccga 9173701  T
Q  200 gaatcccccaccaccaccaccaaa 223  Q
    ||||||||||||||||||||||||    
T  9173700 gaatcccccaccaccaccaccaaa 9173677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 89 - 195
Target Start/End: Original strand, 754231 - 754337
Alignment:
Q  89 ggttgttcctcttgatgccccacatgatgatccacctcagaatgaacctcctattgtgttgccgcttcttttacttgaagatgcgcatgattccggaaat 188  Q
    |||||||||  ||||||||||| ||| |||||||||| ||| ||||||| |||||||||||| ||||||||||||||||||||| ||||||||||| |||    
T  754231 ggttgttccggttgatgccccaaatgctgatccacctaagattgaaccttctattgtgttgctgcttcttttacttgaagatgcacatgattccgggaat 754330  T
Q  189 gccaaat 195  Q
    |||||||    
T  754331 gccaaat 754337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 50515401 - 50515623
Alignment:
Q  1 ttcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcattttt-gactctgcttcgcactattttcagtcaaggttgttcctc 99  Q
    ||||||| ||||||| |||||| |  |||| | ||||||  | ||||||||||||||||| |||| ||| | ||||| ||||||   | |||||||||      
T  50515401 ttcatgctttccggaattcgaaatccggactacaccagtacaaaaactgtgttcattttttgactatgcat-gcactgttttcatatatggttgttccgg 50515499  T
Q  100 ttgatgccccacatgatgatccacctcagaatgaacctcctattgtgttgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgt 199  Q
    ||||| ||||| ||| |||||||||| ||| ||||||| | | ||  |||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  50515500 ttgataccccaaatgttgatccacctgagattgaaccttcaaatgcattgccgcttcttttacttgaagatgcgcatgattccggtaatgccaaatccga 50515599  T
Q  200 gaatcccccaccaccaccaccaaa 223  Q
    ||||||||||||| ||||||||||    
T  50515600 gaatcccccaccaacaccaccaaa 50515623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 44713223 - 44713048
Alignment:
Q  44 aaactgtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgatgatccacctcagaatgaacctcctat 142  Q
    |||||||||||||||| ||||| ||| | ||| | |||||||  | |||||||||  ||||||||||| ||| |||||||| | ||| | |||||||||     
T  44713223 aaactgtgttcattttctgactatgcct-gcattgttttcagatatggttgttccggttgatgccccaaatgttgatccacatgagattcaacctcctaa 44713125  T
Q  143 tgtgttgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaccac 219  Q
    ||||||||| ||| ||||||||||||||| |||||||| ||| ||||||| ||| | ||||||||||||||||||||    
T  44713124 tgtgttgccacttattttacttgaagatgtgcatgattacggtaatgccatatctgagaatcccccaccaccaccac 44713048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 45910578 - 45910454
Alignment:
Q  1 ttcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctc 99  Q
    ||||||||||| ||| |||||| || ||||   ||||||  |||||||||||||||||| ||||| ||| | ||||| |||||||  | |||||||||      
T  45910578 ttcatgcgttctggagttcgaaattcggactgcaccagtacagaaactgtgttcattttctgactatgcct-gcactgttttcagatatggttgttccgg 45910480  T
Q  100 ttgatgccccacatgatgatccacct 125  Q
    || |||||||| ||| ||||||||||    
T  45910479 ttaatgccccaaatgttgatccacct 45910454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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